Factsheet for Os08t0398000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

vacuole: 18557835
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G356100.2	Wheat	plasma membrane	90.7	91.08
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	90.5	90.78
TraesCS1A01G342900.2	Wheat	plasma membrane	90.19	90.37
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	88.33	88.97
Zm00001d032279_P005	Maize	golgi, plastid	89.15	88.97
HORVU1Hr1G075640.9	Barley	golgi	88.95	87.95
GSMUA_Achr7P23880_001	Banana	plasma membrane	75.31	76.1
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	12.4	70.59
GSMUA_Achr3P20560_001	Banana	plastid	20.87	70.38
PGSC0003DMT400046727	Potato	plasma membrane	65.81	68.2
VIT_17s0000g05850.t01	Wine grape	plasma membrane	66.94	67.64
KRH54517	Soybean	plasma membrane	65.81	65.87
CDY24159	Canola	golgi, mitochondrion	63.22	65.31
CDY36933	Canola	golgi, mitochondrion	64.15	64.35
AT5G61730.2	Thale cress	plasma membrane, plastid	63.12	64.32
AT5G61690.2	Thale cress	plasma membrane	63.22	64.22
Bra018116.1-P	Field mustard	golgi, mitochondrion	65.39	64.2
CDY64180	Canola	plasma membrane	41.43	63.96
KRH63387	Soybean	plasma membrane, plastid	63.22	63.62
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	64.46	63.48
CDY02116	Canola	plasma membrane	54.96	63.33
CDY23042	Canola	plasma membrane	61.16	63.18
CDY23040	Canola	plasma membrane	61.78	62.68
Bra012928.1-P	Field mustard	plasma membrane	59.92	62.57
CDX68435	Canola	mitochondrion, plastid	16.84	62.45
CDY23800	Canola	plasma membrane	58.99	62.4
CDY62594	Canola	cytosol	29.44	62.36
CDY52820	Canola	cytosol, nucleus, plasma membrane	55.58	61.28
CDY02118	Canola	plasma membrane	61.05	59.4
CDY62596	Canola	cytosol, plasma membrane, vacuole	18.59	58.63
Bra012930.1-P	Field mustard	plasma membrane	54.34	57.93
CDX68434	Canola	plasma membrane	41.63	56.76
Solyc06g070960.1.1	Tomato	plasma membrane	54.03	56.48
Os02t0107900-00	Rice	cytosol	9.3	37.34
Os08t0398300-01	Rice	plasma membrane	24.17	24.45
Os06t0589300-01	Rice	plasma membrane	23.45	23.92
Os08t0398350-00	Rice	cytosol	19.94	22.95
Os11t0490800-02	Rice	plastid	6.71	22.49
Os03t0670100-01	Rice	plastid	6.71	18.41
Os06t0695800-01	Rice	unclear	6.4	17.92
Os10t0434900-00	Rice	cytosol, mitochondrion	1.86	13.43
Os09t0360900-01	Rice	plasma membrane	5.37	11.21

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	EntrezGene:4345497	MapMan:5.8.5	InterPro:AAA+_ATPase	InterPro:ABCA
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AK101910	ProteinID:BAC99428.1	ProteinID:BAF23656.1	ProteinID:BAT05319.1
ProteinID:EEE68635.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0043231	GO:GO:0055085	InterPro:IPR003439	EnsemblPlantsGene:Os08g0398000	EnsemblPlants:Os08t0398000-01	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193
UniProt:Q6ZIW1	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00001D8CF2	RefSeq:XP_015650255.1
SEG:seg	:	:	:	:	:

Description

ABC TRANSPORTER A FAMILY MEMBER 3ABC transporter-like domain containing protein. (Os08t0398000-01)

Coordinates

chr8:-:18960126..18966328

Molecular Weight (calculated)

107505.0 Da

IEP (calculated)

7.272

GRAVY (calculated)

0.015

Length

968 amino acids

Sequence
(BLAST)

001: MELLSGAALA WQQYRALLRK NATLTWRHRR SASLQLLSSL VFIFLIFCID RAIRSRFSYT TAYRNVPDPA ALVAPPIPPC EDKYFVREPC YDFLWSGGGG
101: AGSARVAGIV EAIRRNNPGR PIPAEKVLGF NTPDEVDAWL FQNPMRCPGA LHFQVINDTQ IKYGIQTNST PVARRGTYED PTFKFQIPLQ IAAEREMARL
201: LIGDPNFSWT VGFKEFAHPA TETFSTIAQA GPTFFLAIAM FGFVFQISAL VTEKELKLRQ AMSIMGLYES AYWLSWLTWE AFVTLLSALL TVLFGMMFQF
301: DFFLHNNFGI LFLLFFLFQL NMLSFAFMIS TFVTKAASAT TVGFAIFIIG FLTQLVTTFG FPYSTSYQKY YRTIWSLFPP DVFAQALNIL GKATATPEDK
401: GISWNQRGQC QSFETDCVIT IDDIYKWLIS TFFLWFVLAI YFDNIIPNVN GVRKSVFYFL MPSYWTGKGG GKLQEGGLFS FFGSNRPADD ASPTDEDVIA
501: EENLVKQQAA NNEVDPGVAV QICGLRKTYP GSFSMGCCRC RTTKPFHSVK GLWVNLEKDQ LFCLLGPNGA GKTTTISCLT GITPITGGDA MIYGHSVRST
601: AGMSNIRRMI GVCPQFDILW DALTAKEHME LFASIKGLPP STIKSVAEQS LIQVKLSQAA NVRAGSYSGG MKRRLSVAIA LIGDPKLVFL DEPTTGMDPI
701: TRRHVWDIIE EAKKGRAIVL TTHSMEEADI LSDRIAIMAK GKLRCIGTSI RLKSKFGTGY IANVNFSGNG HTQSPNINGN TEVPVNPNIE SVKWFFKERL
801: DVDPKEESRT FLTFVIPHEK EPLLTRFFGE LQDREREFGI SDIQLGLTTL EEVFLNIAKQ AELESSTAEG TLVTLNLSSG SSIQIPKGAR FVGIPGTESE
901: DHPRGVMVEV YWDQDDNGSL CISGHSDEIP VPANVQLGRP PSLSRRASVG RGNPVGYIID PNEVTAAR

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.