Factsheet for Os02t0107900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G211300.1	Wheat	cytosol, peroxisome, plasma membrane	76.35	23.17
TraesCS6A01G183200.1	Wheat	plasma membrane	78.01	20.19
TraesCS6D01G170100.1	Wheat	plastid	78.01	20.11
HORVU6Hr1G038520.24	Barley	endoplasmic reticulum, plasma membrane	76.35	19.6
EES04733	Sorghum	plasma membrane	74.27	18.78
Os08t0398350-00	Rice	cytosol	59.75	17.12
Os08t0398300-01	Rice	plasma membrane	65.15	16.41
Os06t0589300-01	Rice	plasma membrane	62.24	15.81
Os11t0490800-02	Rice	plastid	18.26	15.22
Zm00001d016396_P001	Maize	plasma membrane	42.74	13.48
Os03t0670100-01	Rice	plastid	16.6	11.33
Os06t0695800-01	Rice	unclear	14.94	10.4
Os08t0398000-01	Rice	plasma membrane	37.34	9.3
Os10t0434900-00	Rice	cytosol, mitochondrion	2.49	4.48
Os09t0360900-01	Rice	plasma membrane	2.49	1.29

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	UniProt:A0A0N7KEJ4	InterPro:ABCA	InterPro:ABC_transporter-like	ProteinID:BAS76585.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EnsemblPlantsGene:Os02g0107900	EnsemblPlants:Os02t0107900-00
InterPro:P-loop_NTPase	PFAM:PF00005	PANTHER:PTHR19229	PANTHER:PTHR19229:SF127	SUPFAM:SSF52540	UniParc:UPI000393AA66
SEG:seg	:	:	:	:	:

Description

Similar to ABC transporter family, cholesterol/phospholipid flippase. (Os02t0107900-00)

Coordinates

chr2:-:451471..453156

Molecular Weight (calculated)

26551.2 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.246

Length

241 amino acids

Sequence
(BLAST)

001: MDIQFEMNKI YAGIGVCPQH DLLWETLNGR EHLLFYGRLK NLQGAPLSQA IEKSLKNVRL FAGGIADKLV SKYSGGMKRR LSVAISLIGD PKVVYMDEPS
101: SGLDPASRKD LWNAVKSAKQ DRAIILTTHS MEEAEFLCDR IGIIANGSLQ CIGNSKELKA KYGGSYVLTV TTATGEAEEE MRRLVQSISP TMNIVYHISG
201: TQKFEMAKPM EHAKRRMNVL AWGLADTTNA GGCLHQSCQG E

Best Arabidopsis Sequence Match ( AT5G61700.1 )
(BLAST)

001: MVNPSPASFW TQANALLRKN LTYQRKHIWT NVRLILVPLF LCLILLAIQQ VLDALMKGVS DMSNCGGNVT LPGGICPIPN PPSLPPMLQI PQHELRSVKT
101: DFFSYKDLPD KLCRETGSCP VTILFTGDKL PLGKALSANI FSTSFVVNSS DLLPTLANNV LGSTEAAGED NYEDPGIASD LPIYSIQPSC SANSTWPLSL
201: GQIQTAVKCV QGLCLWRNNS VEVNDELFKG SWRGNPAGMP NEIVAAYDLM STDRKNFNVT IWYNSTYNDE FATGQALKLV RVPRSINLIS NAYLKFLKGP
301: GTRILFEFLK EVPKEETKMN QDIASLLGPL FFTWVVLLLF PVILTSLVYE KQERLRIIMK MHGLGDGPYW MISYAYFLTI SMLYVISLVG FGSAIGLKYF
401: RRNDYSIQFV FYFIYSNLQI SLAFLVSSIF SKVKTVTVIA YILVYGTGLL GSFLFQKMIE TQSFPEEWIL AMELYPGFSL YRGLYEFSQY ASRGNGMKWQ
501: DLSDSGMGEV FCIMSVEWFL ALIVAYYIDQ VFTSGKHPFF FLVNLFKSPS SLPRRPTVQR LDSKRVFIDM DKHDVTQERE SVQKLRNEGS TGHAILCDNL
601: KKVYPGRDGN PPKMAVRGLY LSVSSGECFG MLGPNGAGKT SFISMMTGLL KPSSGTALVQ GLDICKDMNK VYTSMGVCPQ HDLLWETLTG REHLLFYGRL
701: KNIKGSDLTQ AVEESLKSVS LYDGGVGDKP AGNYSGGMKR RLSVAISLIG NPKVVYLDEP STGLDPASRK NLWNVIKRAK QNTAIILTTH SMEEAEFLCD
801: RLGIFVDGGL QCIGNSKELK SRYGGSYVFT MTTSSKHEEE VERLVESVSP NAKKIYHLAG TQKFELPKQE VRIAEVFRAV EKAKANFTVF AWGLADTTLE
901: DVFIKVARTA QAFISLS

Arabidopsis Description

ABCA12ABC transporter A family member 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.