Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G170100.1 | Wheat | plastid | 96.85 | 82.25 |
| TraesCS6A01G183200.1 | Wheat | plasma membrane | 95.59 | 81.53 |
| HORVU6Hr1G038520.24 | Barley | endoplasmic reticulum, plasma membrane | 93.83 | 79.34 |
| Os02t0107900-00 | Rice | cytosol | 23.17 | 76.35 |
| EES04733 | Sorghum | plasma membrane | 70.03 | 58.34 |
| Zm00001d016396_P001 | Maize | plasma membrane | 50.0 | 51.96 |
| TraesCS1B01G356200.1 | Wheat | plasma membrane | 52.64 | 43.91 |
| TraesCS5B01G188600.1 | Wheat | plasma membrane | 52.02 | 43.47 |
| TraesCS4B01G365000.1 | Wheat | plasma membrane | 53.15 | 42.89 |
| TraesCS1B01G356300.1 | Wheat | mitochondrion | 48.99 | 41.21 |
| TraesCS7B01G260800.1 | Wheat | plastid | 48.61 | 40.38 |
| TraesCS3B01G432400.1 | Wheat | plastid | 9.07 | 26.28 |
| TraesCS4B01G315100.1 | Wheat | cytosol | 7.93 | 23.95 |
| TraesCS7B01G327900.1 | Wheat | cytosol, golgi, mitochondrion | 7.68 | 23.46 |
| TraesCS4B01G336400.1 | Wheat | cytosol, plastid | 7.68 | 21.48 |
| TraesCS1B01G356100.2 | Wheat | plasma membrane | 25.82 | 21.27 |
| TraesCS5B01G369900.1 | Wheat | plastid | 8.56 | 19.05 |
Protein Annotations
| MapMan:24.1.3.2.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABCA | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFAM:PF12698 | ScanProsite:PS00211 | PFscan:PS50893 | PANTHER:PTHR19229 | PANTHER:PTHR19229:SF127 | SMART:SM00382 |
| SUPFAM:SSF52540 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G211300 | EnsemblPlants:TraesCS6B01G211300.1 | TIGR:cd03263 | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:279077147..279082288
Molecular Weight (calculated)
89195.8 Da
IEP (calculated)
5.976
GRAVY (calculated)
0.039
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNMIPVHDA SVNVSADDIS ALADFVLAGY SGYSGSPLVD SFLQNKCTPN LTLSYSFVDG NETGTQDVDC TEGLMLWRDS SWLINDDLYS GYTNRSNEFA
101: AAYDFLSSDQ GNFNLIISYN STYEFDAYDG LPIPVFQFFG GNKPRLLEVP RLTNMASNAY LRLIGNGLKI SFDFVKEMPR AGRSWSTYDL TSIIGPLPYV
201: LTIQLLFPVI LTNIVYEKQK KLRIMMKMHG LGDLPYWTIS YCYFILLSML YLLSFMVFGT VFGFTFFRLN SYGVQFVFYF AYMSLQISFA FLMATWFSNV
301: RTAAVTGYFY VFGSGLIADY FFKPYIEDIF ISRSWIILLE LFPPFSLYRI VYEFSQSALL VSQIDRTGMQ WSDLNDPNGM ASVLTIMILE WILFLLLSFY
401: LDHFGSFQSG IRKAVLLLHS RRAGNRSQSA QQQTTQIQEF EASVEMERTD VIKEREMVGQ LLQEPNSSYS VICDNLKKVY PGKDGNSKKI AVRELSLSMA
501: RGQCFGVLGP NGAGKTTLIN MLTGFTKPTS GTAYIEGMDI RLDMDKIYTG IGVCPQHDLL WENLTGREHL MFYGRLKKLK GAKLAQAIEQ SLKSVRLFDG
601: GVPDKLVQKY SGGMKRRLSV AISLIGDPKV VYMDEPSSGL DPASRKDLWK AVKSAKQDRA IILTTHSMEE AEVLCDRIGI IADGTLQCIG NSRELKTKYG
701: GSYVLTITTM AAEEAEEEVA KLVRSISPAV SRVYRISGTQ RFEMPKQEVS ISAVFHVMED AKSRMTILAW GLSDTTLEDV FIRVAKENEA SSVI
101: AAYDFLSSDQ GNFNLIISYN STYEFDAYDG LPIPVFQFFG GNKPRLLEVP RLTNMASNAY LRLIGNGLKI SFDFVKEMPR AGRSWSTYDL TSIIGPLPYV
201: LTIQLLFPVI LTNIVYEKQK KLRIMMKMHG LGDLPYWTIS YCYFILLSML YLLSFMVFGT VFGFTFFRLN SYGVQFVFYF AYMSLQISFA FLMATWFSNV
301: RTAAVTGYFY VFGSGLIADY FFKPYIEDIF ISRSWIILLE LFPPFSLYRI VYEFSQSALL VSQIDRTGMQ WSDLNDPNGM ASVLTIMILE WILFLLLSFY
401: LDHFGSFQSG IRKAVLLLHS RRAGNRSQSA QQQTTQIQEF EASVEMERTD VIKEREMVGQ LLQEPNSSYS VICDNLKKVY PGKDGNSKKI AVRELSLSMA
501: RGQCFGVLGP NGAGKTTLIN MLTGFTKPTS GTAYIEGMDI RLDMDKIYTG IGVCPQHDLL WENLTGREHL MFYGRLKKLK GAKLAQAIEQ SLKSVRLFDG
601: GVPDKLVQKY SGGMKRRLSV AISLIGDPKV VYMDEPSSGL DPASRKDLWK AVKSAKQDRA IILTTHSMEE AEVLCDRIGI IADGTLQCIG NSRELKTKYG
701: GSYVLTITTM AAEEAEEEVA KLVRSISPAV SRVYRISGTQ RFEMPKQEVS ISAVFHVMED AKSRMTILAW GLSDTTLEDV FIRVAKENEA SSVI
001: MANHVPASFL TRANALFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCIH KNGDGKCERK SCGLQYSSLT QASFCAFPNP
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS
Arabidopsis Description
ABCA4ABC transporter A family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT8]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.