CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016396_P001	Maize	plasma membrane	67.05	83.64
Os02t0107900-00	Rice	cytosol	18.78	74.27
TraesCS6B01G211300.1	Wheat	cytosol, peroxisome, plasma membrane	58.34	70.03
TraesCS6A01G183200.1	Wheat	plasma membrane	67.26	68.85
TraesCS6D01G170100.1	Wheat	plastid	67.16	68.45
HORVU6Hr1G038520.24	Barley	endoplasmic reticulum, plasma membrane	66.0	66.99
OQU84622	Sorghum	cytosol, peroxisome, plasma membrane	43.23	57.87
KXG29778	Sorghum	plasma membrane	54.98	54.93
KXG25097	Sorghum	plasma membrane	48.69	48.43
OQU89360	Sorghum	plasma membrane	47.22	47.47
EER89983	Sorghum	plastid	45.33	45.28
OQU80391	Sorghum	mitochondrion	43.34	44.08
OQU80389	Sorghum	mitochondrion, plasma membrane	41.76	37.2
KXG28389	Sorghum	plastid	7.03	24.63
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	23.82	23.62
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	6.61	23.51
EER96343	Sorghum	plastid	7.66	20.68

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
UniProt:C5XXZ9	EnsemblPlants:EES04733	ProteinID:EES04733	ProteinID:EES04733.2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF127	SMART:SM00382	EnsemblPlantsGene:SORBI_3004G089200	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0007F2F40D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7562004..7569161

Molecular Weight (calculated)

106544.0 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.040

Length

953 amino acids

Sequence
(BLAST)

001: MGASRLEQTN ALFRKNLVIQ RRACKTNCCL IMFPLLFCSV IGGLQIAINR ASASSRGEDG GATPATHLDC SCSNVSVDEN AMGGIECPYA YAYQCPLPRA
101: PKQPPFLKIP FAKYRAVQDG LFPYTDLPDA SCRVDESCAA TFLVTGSNHS FVESVIDNIF PAQNSSVNLS ADISALSDFV LADYGGSFLQ NKCFPNLTLS
201: YPVQHGNRTV SQDVQCTEGL VLWRDSSRLI NDELYGGYYQ GNNNHKFDAI AAAYDFLSSD QSNFNLAISY NSTKNYDFYD ESDQSVPVLN NQAGPVQTAN
301: SDQVPRLANM ASNAYLHLKG NGLKMSFEFV KDMPRAALPA VHNDQFDLAP YIGQLPFVWT MELLFPVILT NLVYERQNKL RIMMKMHGLG DLPYWTISYF
401: YFLLLSLLYV LSFMLFGSAL GLTFFRQNNY GVQFVFFFAY MNLQISFAFL MTTYFSSVRT ATVTGYLYIF VSGLLSQFIF RYYVEDANLS RSWITLMELL
501: PAFSLYRIVY EFSRFEWLGN YMAFSGIQWT DMTNPENGLA GVLTIMVLEW FVFLLFTFYL DRFCSFKDGM RKAAVFVRSR INGNHVETAQ QQNIQLQEFR
601: ASVEMERTDV IKEREIVGHI SEESRRSYSV ICDNLEKVYR GKDGNANKIA VRGISISMSR GQCFGVLGPN GAGKTTMINM LTGFCKPTSG TAYIEGMDVR
701: FDMDRIYTGI GVCPQDDLLW ENLTGREHLL FYGRLKKLKG AALVEAIEQS LRSMHLLAGG VPDKLVGKYS GGMKRRLSVA ISLIGDPKVV YMDEPSSGLD
801: PASRKNLWKA VKSAKQDRTI ILTTHSMEEA DVLCDRIGII ANGSLQCIGS SKELKDRYGG SCVLTVTTPA GEEEEEEVER LVQSISPAAN RVYRVSGTQK
901: FEMPKQGMKI SVVFGAMEQA KSSLHILAWG LADTTLEDVF VRVAKQSDMS TVT

Best Arabidopsis Sequence Match ( AT3G47750.1 )
(BLAST)

001: MANHVPASFL TRANALFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCIH KNGDGKCERK SCGLQYSSLT QASFCAFPNP
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS

Arabidopsis Description

ABCA4ABC transporter A family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT8]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.