CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019644_P003	Maize	plastid	95.47	88.92
Os03t0670100-01	Rice	plastid	82.44	82.44
Zm00001d003145_P001	Maize	mitochondrion	28.05	78.57
TraesCS5B01G369900.1	Wheat	plastid	79.04	78.15
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	64.59	77.03
Zm00001d047131_P001	Maize	plastid	30.59	74.48
TraesCS5A01G367900.1	Wheat	golgi	78.19	72.44
CDY16404	Canola	plastid	66.29	71.12
HORVU5Hr1G091750.1	Barley	plastid	77.9	71.06
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	79.32	70.89
Bra022481.1-P	Field mustard	plastid	66.01	70.82
CDY57805	Canola	plastid	66.01	70.82
VIT_04s0023g00290.t01	Wine grape	plastid	67.71	70.09
KRH40333	Soybean	plastid	68.27	69.86
AT1G65410.1	Thale cress	plastid	66.86	68.41
Solyc04g056650.2.1	Tomato	plastid	67.71	68.29
KRH00900	Soybean	plastid	66.29	59.24
CDY39288	Canola	cytosol	27.2	48.48
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	21.25	27.99
KXG28389	Sorghum	plastid	19.26	25.0
OQU84622	Sorghum	cytosol, peroxisome, plasma membrane	18.98	9.41
OQU80391	Sorghum	mitochondrion	21.25	8.0
OQU89360	Sorghum	plasma membrane	20.68	7.7
EES04733	Sorghum	plasma membrane	20.68	7.66
KXG29778	Sorghum	plasma membrane	20.68	7.65
EER89983	Sorghum	plastid	20.68	7.65
KXG25097	Sorghum	plasma membrane	20.4	7.52
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	19.83	7.28
OQU80389	Sorghum	mitochondrion, plasma membrane	21.81	7.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	EntrezGene:8061670	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
UniProt:C5X5U1	EnsemblPlants:EER96343	ProteinID:EER96343	ProteinID:EER96343.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382	EnsemblPlantsGene:SORBI_3002G131500	SUPFAM:SSF52540
unigene:Sbi.8252	UniParc:UPI0001A83595	RefSeq:XP_002459822.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:18766437..18770154

Molecular Weight (calculated)

38157.9 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.118

Length

353 amino acids

Sequence
(BLAST)

001: MASPSIPAAL RHPHLPAGGG LLFHSSGDPT SRSALSFRIG DMPMRRCQTD VGPVLAARSP GLGNVDNLHQ SSSLSRSWDL NRKIDDDHDV LIECRDVHKS
101: FGDKHVLRGV SFKIRHGEAV GIIGPSGTGK STILKVMAGL LAPDKGDVII CGKKRHGLVS DEDMEGVRIG LVFQSAALFD SLTVRENVGF LLYENSSLPE
201: DHIGKLVTET LAAVGLKGVE DRMPSELSGG MKKRVALARS IIFDDTKDVV EPEVLLYDEP TAGLDPIAST VVEDLIRSVH MTGRDALGKP GKIASYVVVT
301: HQHSTIRRAV DRLLFLHEGK VVWEGMTNEF TTSTNPIVQQ FASGSLDGPI KYF

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.