CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00900	Soybean	plastid	94.49	82.53
VIT_04s0023g00290.t01	Wine grape	plastid	75.94	76.83
CDY16404	Canola	plastid	71.3	74.77
Bra022481.1-P	Field mustard	plastid	70.72	74.16
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	63.48	73.99
CDY57805	Canola	plastid	70.43	73.86
AT1G65410.1	Thale cress	plastid	73.62	73.62
Zm00001d003145_P001	Maize	mitochondrion	26.67	73.02
Solyc04g056650.2.1	Tomato	plastid	73.62	72.57
EER96343	Sorghum	plastid	69.86	68.27
Os03t0670100-01	Rice	plastid	69.86	68.27
Zm00001d047131_P001	Maize	plastid	27.83	66.21
TraesCS5B01G369900.1	Wheat	plastid	68.41	66.11
Zm00001d019644_P003	Maize	plastid	71.3	64.91
TraesCS5A01G367900.1	Wheat	golgi	68.12	61.68
HORVU5Hr1G091750.1	Barley	plastid	67.83	60.47
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	68.41	59.75
CDY39288	Canola	cytosol	29.86	52.02
KRH41857	Soybean	plasma membrane	20.0	26.54
KRG94568	Soybean	mitochondrion	17.97	23.75
KRH54520	Soybean	plasma membrane, plastid	22.32	9.54
KRH03450	Soybean	plasma membrane, plastid	22.03	7.97
KRH56933	Soybean	plasma membrane, plastid	21.74	7.9
KRH63387	Soybean	plasma membrane, plastid	20.58	7.38
KRH54517	Soybean	plasma membrane	20.58	7.34
KRH63384	Soybean	plasma membrane	15.07	7.14
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	9.28	6.52
KRH66908	Soybean	cytosol	17.97	3.4
KRH63056	Soybean	extracellular, plasma membrane, vacuole	0.58	2.35

Protein Annotations

EntrezGene:100789283	Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EMBL:ACUP02006035	EnsemblPlantsGene:GLYMA_09G251900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	UniProt:I1L6C1	InterPro:IPR003439	EnsemblPlants:KRH40333
ProteinID:KRH40333	ProteinID:KRH40333.1	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00023388F5	:

Description

hypothetical protein

Coordinates

chr9:-:47224361..47228646

Molecular Weight (calculated)

37717.0 Da

IEP (calculated)

8.012

GRAVY (calculated)

-0.258

Length

345 amino acids

Sequence
(BLAST)

001: MVSLSTTPFL PFTAKNASTR FPPPNSFSRN KQRSNRDHRK VVCACIAPPQ NFKSQDSSAI NFNGSSKSEQ LSTAWDHEDD SDVLIECRDV YKSFGEKKIL
101: NGVSFKIRHG EAVGIIGPSG TGKSTVLKII AGLLAPDKGE VYIRGKKRVG LVSDDDISGL RIGLVFQSAA LFDSLTVREN VGFLLYEHSS MSEDQISELV
201: TETLAAVGLK GVEDRLPSEL SGGMKKRVAL ARSIICDTTE ESKEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHIKGRDAR GKPGNIASYV VVTHQHSTIK
301: RAIDRLLFLH KGKIVWEGMT HEFTTSTNPI VQQFASGSLD GPIRY

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.