CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56933	Soybean	plasma membrane, plastid	91.3	91.78
KRH63056	Soybean	extracellular, plasma membrane, vacuole	6.92	77.65
KRH54520	Soybean	plasma membrane, plastid	64.36	76.08
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	37.84	73.52
CDX94927	Canola	cytosol	9.12	73.11
KRH63384	Soybean	plasma membrane	55.45	72.66
VIT_17s0000g05860.t01	Wine grape	plasma membrane, plastid	68.03	68.39
VIT_12s0055g00730.t01	Wine grape	extracellular	8.91	66.93
CDY02120	Canola	cytosol, nucleus, plasma membrane	46.23	66.92
Solyc03g113040.2.1	Tomato	plastid	65.93	66.56
CDY31786	Canola	cytosol, nucleus, plasma membrane	45.81	66.21
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	43.61	65.2
Solyc03g113060.2.1	Tomato	extracellular	63.73	64.41
Bra018114.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.45	64.39
CDY36930	Canola	plasma membrane	63.21	64.01
Bra018113.1-P	Field mustard	plasma membrane	63.21	64.01
CDY24156	Canola	plasma membrane	63.21	64.01
AT3G47790.1	Thale cress	plasma membrane	59.64	63.15
AT3G47780.1	Thale cress	plasma membrane	61.43	62.67
CDX68441	Canola	plasma membrane	61.64	62.42
CDX83025	Canola	plasma membrane	61.22	62.0
Bra033785.1-P	Field mustard	plasma membrane	61.22	62.0
Bra019513.1-P	Field mustard	plasma membrane	57.76	61.7
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	57.02	61.4
AT5G61700.1	Thale cress	plasma membrane	58.8	61.18
CDY21797	Canola	plasma membrane	57.86	61.06
CDX77874	Canola	plasma membrane	53.04	61.04
TraesCS7A01G367700.1	Wheat	plasma membrane	36.27	60.92
CDY39546	Canola	plasma membrane	59.33	60.53
CDX77421	Canola	plasma membrane	59.33	60.53
Bra018115.1-P	Field mustard	plasma membrane	58.6	60.37
CDY24158	Canola	plasma membrane	58.6	60.37
AT3G47760.3	Thale cress	plasma membrane	59.12	60.26
Bra015049.1-P	Field mustard	plasma membrane	56.18	60.02
CDY62599	Canola	plasma membrane	54.51	59.84
AT3G47750.1	Thale cress	mitochondrion, plasma membrane	58.7	59.77
AT3G47770.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	57.97	59.72
AT3G47740.1	Thale cress	plasma membrane	58.28	59.66
CDY02114	Canola	plasma membrane	55.24	59.41
CDY23039	Canola	plasma membrane	55.24	59.35
AT5G61740.1	Thale cress	plasma membrane	56.39	59.19
KXG25097	Sorghum	plasma membrane	59.43	59.19
CDY23043	Canola	cytosol, mitochondrion	31.45	58.59
CDY36931	Canola	plastid	57.13	58.54
TraesCS1A01G343000.1	Wheat	plasma membrane	58.39	58.45
TraesCS1D01G345200.1	Wheat	plasma membrane	58.28	58.4
TraesCS1B01G356200.1	Wheat	plasma membrane	57.97	58.09
CDY24157	Canola	plastid	57.86	58.04
Os08t0398300-01	Rice	plasma membrane	58.07	57.89
CDX68440	Canola	cytosol, mitochondrion	8.39	57.55
HORVU1Hr1G075620.5	Barley	plasma membrane	57.44	57.44
TraesCS5A01G193200.1	Wheat	plasma membrane	56.81	57.29
Bra012931.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.53	57.26
TraesCS5D01G195700.1	Wheat	plasma membrane	56.71	57.19
HORVU4Hr1G087670.8	Barley	mitochondrion	57.55	57.19
PGSC0003DMT400083071	Potato	plasma membrane	55.97	57.11
Zm00001d020208_P003	Maize	plasma membrane	56.6	56.96
OQU89360	Sorghum	plasma membrane	56.6	56.96
Zm00001d050259_P002	Maize	plasma membrane	58.6	56.81
Solyc06g070950.1.1	Tomato	plasma membrane	52.83	56.57
TraesCS4B01G365000.1	Wheat	plasma membrane	58.18	56.4
CDY23798	Canola	nucleus, peroxisome, plasma membrane	22.64	56.25
Bra012927.1-P	Field mustard	cytosol	35.85	55.61
TraesCS5B01G188600.1	Wheat	plasma membrane	55.35	55.58
TraesCSU01G138200.1	Wheat	plasma membrane	58.07	55.51
Bra033786.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.19	55.03
TraesCS5A01G534100.3	Wheat	cytosol	57.97	54.75
HORVU5Hr1G056930.20	Barley	plasma membrane	55.97	54.66
Os06t0589300-01	Rice	plasma membrane	54.3	54.58
TraesCS7D01G355100.1	Wheat	plastid	54.4	54.35
TraesCS7B01G260800.1	Wheat	plastid	53.98	53.87
TraesCS3D01G368700.2	Wheat	plasma membrane	54.09	53.31
EER89983	Sorghum	plastid	53.25	53.25
Zm00001d036927_P001	Maize	plasma membrane, plastid	53.25	52.64
HORVU7Hr1G085680.2	Barley	endoplasmic reticulum, peroxisome, plastid	53.98	51.97
VIT_18s0041g02240.t01	Wine grape	plasma membrane	38.36	49.73
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	22.12	49.53
GSMUA_Achr7P23890_001	Banana	plasma membrane	60.48	49.32
GSMUA_Achr3P20510_001	Banana	plasma membrane	58.7	47.74
CDX68439	Canola	nucleus	7.44	44.94
HORVU3Hr1G030470.1	Barley	cytosol, extracellular, plasma membrane	7.23	41.07
HORVU6Hr1G043820.1	Barley	cytosol, endoplasmic reticulum, plasma membrane	7.23	41.07
Solyc06g070930.2.1	Tomato	plastid	11.43	39.78
HORVU4Hr1G039510.1	Barley	cytosol	6.92	39.29
KRH54517	Soybean	plasma membrane	24.63	24.3
KRH63387	Soybean	plasma membrane, plastid	24.11	23.91
KRH40333	Soybean	plastid	7.97	22.03
KRH41857	Soybean	plasma membrane	5.77	21.15
KRG94568	Soybean	mitochondrion	5.45	19.92
KRH00900	Soybean	plastid	7.97	19.24
KRH66908	Soybean	cytosol	19.08	9.97

Protein Annotations

EntrezGene:100806425	MapMan:24.1.3.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EMBL:ACUP02010348	EnsemblPlantsGene:GLYMA_17G098300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0043231	GO:GO:0055085	UniProt:I1MTS0	InterPro:IPR003439
EnsemblPlants:KRH03450	ProteinID:KRH03450	ProteinID:KRH03450.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF141	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000233E97F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:7744245..7753347

Molecular Weight (calculated)

106479.0 Da

IEP (calculated)

7.577

GRAVY (calculated)

0.020

Length

954 amino acids

Sequence
(BLAST)

001: MANPVPASFW TQANALLRKN LTFHKRNVKT NAQLVLFPLI LFLLLFALQR LIDTQFGGSI FKCGCVCANN TTTTTQEQHS RCPDSEKVCG IHYSDSIQAA
101: FCAIPNPIEW PPLLQLPAPP NRAARTPSLP LPDFPDASCR RTDSCPLTLL FTALNHSFAE TVSANMFGSA LNVSDFGSDF LASLAMNVLG SESTPGSNNF
201: IEPAFSSGLP IYYLQTKCTD TEKSGLSFPS LPAADNEIKC DQALNLWRNS SSEINSELYK GYQRGNSDGQ VNEIVSAFDF LNSNGNGYNV CIWYNSTYER
301: HTGFGPSSVL LRIPRSINLL SNSYLQFLLG PGTKMLFEFV KEMPKPETSF NLELSSLLGT MFFTWVILQL FPVVLTSLVY EKQQKLRIMM KMHGLGDGPY
401: WMISYGYFLA ISVIYMLCFV IFGSLLGLKI FTINDYSIQF VFYFIYINLQ IALAFMVASI FSNVKTATVT AYIGVFGTGL LAVFLFQFFV QNTSFPRGWI
501: IVMEFYPGFA LYRGLYELAQ FSFQGSSSGS GGMKWQNLSE STNGMKEVLI IMFVEWIVML FAAFYVDQVL LSGSRKSPLF YLKGFQKRPP FQKLDAQMQG
601: SKVFSQTEKP DVIQEKEKVE QLLLEPSINH TIVCDDVKKV YPGRDGNPDK YAVRGLFLFV PQGECFGMLG PNGAGKTSFI NMMIGLTKPT SGRAFVQGLD
701: IRTQMDEIYT TMGVCPQHDL LWESLTGREH LLFYGRLKNL KGSLLTQAVE ESLMSLNLFH GGVADKQVGK YSGGMKRRLS VAISLIGDPR VIYMDEPSSG
801: LDPASRKSLW NVVKRAKQNR AIILTTHSME EAEALCDRLG IFVNGSLQCV GNAKELKERY GGTYVFTMTT SSDHEKDVEN MVQKLTPNAN KIYHLSGTQK
901: FELPKEDVRI ADVFQAVDAA KRNFTVSAWG LVDTTLEDVF IKVAREAQAF DTLS

Best Arabidopsis Sequence Match ( AT3G47750.1 )
(BLAST)

001: MANHVPASFL TRANALFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCIH KNGDGKCERK SCGLQYSSLT QASFCAFPNP
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS

Arabidopsis Description

ABCA4ABC transporter A family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT8]
SUBAcon: [plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.