Factsheet for PGSC0003DMT400083071

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	65.99	96.71
Solyc06g070930.2.1	Tomato	plastid	25.13	85.77
KRH54520	Soybean	plasma membrane, plastid	51.98	60.22
PGSC0003DMT400083070	Potato	cytosol	7.91	59.68
VIT_17s0000g05860.t01	Wine grape	plasma membrane, plastid	60.21	59.33
TraesCS7A01G367700.1	Wheat	plasma membrane	35.19	57.92
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	30.16	57.43
KRH56933	Soybean	plasma membrane, plastid	57.97	57.11
KRH63384	Soybean	plasma membrane	43.96	56.46
KRH03450	Soybean	plasma membrane, plastid	57.11	55.97
VIT_12s0055g00730.t01	Wine grape	extracellular	7.38	54.33
HORVU4Hr1G087670.8	Barley	mitochondrion	55.08	53.65
TraesCS1D01G345200.1	Wheat	plasma membrane	54.22	53.26
TraesCS1A01G343000.1	Wheat	plasma membrane	54.22	53.2
TraesCS1B01G356200.1	Wheat	plasma membrane	54.12	53.15
HORVU1Hr1G075620.5	Barley	plasma membrane	54.22	53.14
TraesCS5D01G195700.1	Wheat	plasma membrane	53.58	52.96
KXG25097	Sorghum	plasma membrane	54.12	52.82
TraesCS5A01G193200.1	Wheat	plasma membrane	53.26	52.64
Os08t0398300-01	Rice	plasma membrane	53.37	52.14
OQU89360	Sorghum	plasma membrane	52.73	52.0
TraesCS4B01G365000.1	Wheat	plasma membrane	54.65	51.93
Zm00001d020208_P003	Maize	plasma membrane	52.09	51.37
TraesCSU01G138200.1	Wheat	plasma membrane	54.76	51.3
TraesCS5B01G188600.1	Wheat	plasma membrane	51.98	51.16
Zm00001d050259_P002	Maize	plasma membrane	53.58	50.91
TraesCS5A01G534100.3	Wheat	cytosol	54.97	50.89
HORVU5Hr1G056930.20	Barley	plasma membrane	52.51	50.26
Os06t0589300-01	Rice	plasma membrane	50.7	49.95
TraesCS7D01G355100.1	Wheat	plastid	50.8	49.74
TraesCS7B01G260800.1	Wheat	plastid	50.8	49.69
TraesCS3D01G368700.2	Wheat	plasma membrane	51.12	49.38
EER89983	Sorghum	plastid	50.27	49.27
Zm00001d036927_P001	Maize	plasma membrane, plastid	50.05	48.5
HORVU7Hr1G085680.2	Barley	endoplasmic reticulum, peroxisome, plastid	50.8	47.93
VIT_18s0041g02240.t01	Wine grape	plasma membrane	37.01	47.01
GSMUA_Achr7P23890_001	Banana	plasma membrane	57.54	45.98
HORVU6Hr1G043820.1	Barley	cytosol, endoplasmic reticulum, plasma membrane	8.24	45.83
HORVU3Hr1G030470.1	Barley	cytosol, extracellular, plasma membrane	7.91	44.05
HORVU4Hr1G039510.1	Barley	cytosol	7.81	43.45
GSMUA_Achr3P20510_001	Banana	plasma membrane	54.44	43.39
PGSC0003DMT400083147	Potato	plasma membrane	23.1	22.78
PGSC0003DMT400046727	Potato	plasma membrane	22.67	22.7
PGSC0003DMT400036875	Potato	cytosol	6.2	22.05
PGSC0003DMT400074438	Potato	extracellular	6.52	21.79

Protein Annotations

EntrezGene:102587948	MapMan:24.1.3.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:M1D6F3
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698	EnsemblPlantsGene:PGSC0003DMG400033042	PGSC:PGSC0003DMG400033042	EnsemblPlants:PGSC0003DMT400083071
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF141	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000295AFBE	RefSeq:XP_006354788.1	SEG:seg	:	:

Description

Abc transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400033042]

Coordinates

chr6:-:51759443..51766133

Molecular Weight (calculated)

104023.0 Da

IEP (calculated)

5.522

GRAVY (calculated)

-0.044

Length

935 amino acids

Sequence
(BLAST)

001: MADSVTAPAT YGTQADALLR KNLTFQKRNV KTNVRLILVP ILLVLLIRSI EFSSTAMTYK DTKCGCQCVD KNGTGKCEEV CGLEYSNPLQ APSCEVKEPY
101: EWHPVFQLPE SQFSAVKTDV ITYPDLPNES CRDSNSCPAI ILVTGTDQTF GQSVNGYMVK NDSTVESTFI TNQIIGTEIP ADRTGFQDPA FNSRKATFYI
201: IQAGCPADYK GEEINDDHAT YMLQCREGLS LWRNSPSEIN DELFKGYIKG NTEKKTGEIA AAYDWLNTNE NRFNVSVWYN GTYKYEGQSE QLVRVPPLVN
301: LASNAFLQNL LGPSFNILFD NIKEMPKHGS MRMSEISSQM GPILFSWVIL QLFPVAFVAL VYEKQQNLRI MMKMHGLKDG PYWTITYAYF LLISSLYMFG
401: FVAFGSLLEL SIFLRNAFSI QFVFYFIYIN LQIACAFLLA GFFKDVKTAT VMGYLVVFAS GLLGSFFFSN FLSGASISEV WIILMELYPG FALYRGLFEF
501: GEYSKSGLYT GESGGMKWAN LSDPGNGMKQ VMIIMLVEWI VVLLVAFYLD QINSSGKSPL FFLENSRKKQ TLSTMNLLEK KDSGVCLEME KEDVAQEREK
601: VEHMVAGSTS GYPIVVDNLK KVYPGIDGNP DKYAVRGLSL AVPEGECLGM LGPNGAGKTS FISMMIGLTK PSSGAAFVDG LNINTEMDKV YTVMGVCPQH
701: DLLWDTLTGR EHLLFYGRLK NLKGEVLHRA VEDSLKSLNL FNGGVADKQS GRYSGGMKRR LSVAISLIGN PKVVYLDEPS TGLDPASRDT LWTVVKNARK
801: GRAIILTTHS MEEADYLCDR LGIFVDGSLQ CIANSSELKA RYGGSYVLAI TTSADNEVEV ENMVRQICPN ANKVYHLSGT QKFELPKHES KIADVFQLVE
901: NAKSRFPIYA WGMADTTLED VFIKVASSAQ SFNEA

Best Arabidopsis Sequence Match ( AT3G47780.1 )
(BLAST)

001: MADPGPASFS TRANALLRKN LTYQKRNLWS NIRLIMIPFY LCILLVIIQI LFDTQVNNSA DNRCGCECIE RNRAGKCQRE LCGLEHSKPD QAFFCSIPRP
101: PLWPPLLQIP RPESRDVRGL RDDSCRRTGS CPVTILFTGN NRSLGTTVSE NLFTSSVSAN ASEILRTLAN NVLGTTVEAD FTNYLDPGIA SNLSIYNIQP
201: RCILNATFPF SFEQPPLKFE KELRCVQGSN LWTNTSKEVN DKIFKGYKKG NPEGKINEIA AAYDLLNTDR NNFNVHIWYN STYKDDAGNR LIKLIRVPRS
301: VNLVSNAYLQ FLQGPGTRML FEYVKEMPKP ETSLRLDIAS LIGPLFFTWV ILLLFPVILS SLVYEKQQHL RIIMKMHGLG DGPYWMISYA YFLTISVLYV
401: ICLMIFGSAI GLKFFRLNSY SIQFVFYFLY LNLQIALAFL VSSVFSKVKT STVASYIYVF GSGLLGLFLL NFLIEDSSFP RGWIIVMELY PGFSLYRGLY
501: ELAQFAFRGN LRGEDGMKWK DFGDSAMDDV FYIIVVEWFL ALIAAYYIDK ISSSGRNPLF FLQNPFKKSP SLRRPSLQRQ GSKVSVDMEK PDVTHESKKV
601: ERLMLESSTS HAIVCDNLKK VYPGRDGNPP KLAVRGLSLA VPSGECFGML GPNGAGKTSF INMMTGLLKP TSGTALVQGL DICNDMDRVY TSMGVCPQHD
701: LLWETLTGRE HLLFYGRLKN LKGADLNQAV EESLKSVNLF HGGVADKPAG KYSGGMKRRL SVAISLIGNP KVVYMDEPST GLDPASRKNL WTVIKRAKQN
801: TAIILTTHSM EEAEFLCDRL GIFVDGGLQC IGNPKELKGR YGGSYVFTMT TSSEHEQNVE KLIKDVSPNA KKIYHIAGTQ KFELPKEEVR ISEVFQAVEK
901: AKSNFTVFAW GLADTTLEDV FIKVVRNGQA FNVFS

Arabidopsis Description

ABCA7ABC transporter A family member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.