Factsheet for PGSC0003DMT400074438

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068600.2.1	Tomato	cytosol	64.29	97.3
PGSC0003DMT400036875	Potato	cytosol	75.0	79.85
VIT_11s0052g00540.t01	Wine grape	cytosol	70.0	73.13
Bra004271.1-P	Field mustard	cytosol	67.5	71.59
CDX96058	Canola	cytosol	67.5	71.59
Zm00001d014611_P001	Maize	cytosol, mitochondrion, plasma membrane	47.86	71.28
CDY01873	Canola	cytosol	66.79	70.83
AT1G67940.1	Thale cress	cytosol	65.71	69.96
KRH41857	Soybean	plasma membrane	64.64	69.62
TraesCS7A01G427700.1	Wheat	cytosol	61.79	66.54
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	61.79	65.78
TraesCS7B01G327900.1	Wheat	cytosol, golgi, mitochondrion	61.07	65.77
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	62.14	64.93
TraesCS4B01G315100.1	Wheat	cytosol	59.29	63.12
TraesCS4A01G414400.1	Wheat	cytosol	57.5	61.22
TraesCS4B01G336400.1	Wheat	cytosol, plastid	61.07	60.21
HORVU7Hr1G098490.2	Barley	plastid	60.36	57.88
TraesCS4D01G332100.1	Wheat	cytosol	58.57	57.34
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	61.79	55.81
HORVU4Hr1G079940.5	Barley	cytosol	58.21	52.24
Os06t0695800-01	Rice	unclear	62.14	50.29
Os10t0434900-00	Rice	cytosol, mitochondrion	22.5	47.01
PGSC0003DMT400083070	Potato	cytosol	4.29	9.68
PGSC0003DMT400083071	Potato	plasma membrane	21.79	6.52
PGSC0003DMT400083147	Potato	plasma membrane	18.93	5.59
PGSC0003DMT400046727	Potato	plasma membrane	18.21	5.46

Protein Annotations

EntrezGene:102582059	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005315	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
GO:GO:0016887	GO:GO:0035435	InterPro:IPR003439	UniProt:M1CTN9	InterPro:P-loop_NTPase	PFAM:PF00005
EnsemblPlantsGene:PGSC0003DMG400028925	PGSC:PGSC0003DMG400028925	EnsemblPlants:PGSC0003DMT400074438	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43423
PANTHER:PTHR43423:SF1	InterPro:Phosp_transpt1	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000296385C	RefSeq:XP_006366268.1

Description

Phosphate abc transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400028925]

Coordinates

chr6:-:50279471..50281763

Molecular Weight (calculated)

30904.8 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.043

Length

280 amino acids

Sequence
(BLAST)

001: MEISQNWSKI SPQLHSSHSL EISQGERGHL LAVEMNDIKG AAETKIEIRG LNKVSDKGDS ILKSVRVDIP RGVIMGIIGP SGSGKSTILR ALNRLWEPPK
101: NTVFLDGTDI CDLDVLCLRR KVGMLFQLPV LFEGTVADNI RYGPKLKGKK LSDNEVYKLL TLADLDSSFF YKSGGELSVG QAQRVALART LANEPEVLLL
201: DEPTSALDPI STQNIEDVLV KLRKDQMMTI VIVSHSIKQI QRIADIVCLL VDGEIVEIIK PDQLSEAKHP MALRFLQLSS

Best Arabidopsis Sequence Match ( AT1G67940.1 )
(BLAST)

001: MPSLWSNESD GSLREHLVDV VVSGSEPKIR VHDLTRVADD GSRILKGVTI DIPKGMIVGV IGPSGSGKST FLRSLNRLWE PPESTVFLDG EDITNVDVIA
101: LRRRVGMLFQ LPVLFQGTVA DNVRYGPNLR GEKLSDEEVY KLLSLADLDA SFAKKTGAEL SVGQAQRVAL ARTLANEPEV LLLDEPTSAL DPISTENIED
201: VIVKLKKQRG ITTVIVSHSI KQIQKVADIV CLVVDGEIVE VLKPSELSHA THPMAQRFLQ LSS

Arabidopsis Description

ABCI17Sensitive to aluminum rhizotoxicity 1 [Source:UniProtKB/TrEMBL;Acc:D6RVY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.