Factsheet for PGSC0003DMT400083070

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68440	Canola	cytosol, mitochondrion	50.0	44.6
TraesCS7A01G367700.1	Wheat	plasma membrane	59.68	13.03
TraesCS1D01G345200.1	Wheat	plasma membrane	66.94	8.72
TraesCS1B01G356200.1	Wheat	plasma membrane	66.94	8.72
TraesCS1A01G343000.1	Wheat	plasma membrane	66.94	8.71
HORVU1Hr1G075620.5	Barley	plasma membrane	66.13	8.6
TraesCS5B01G188600.1	Wheat	plasma membrane	64.52	8.42
TraesCS5D01G195700.1	Wheat	plasma membrane	63.71	8.35
TraesCS5A01G193200.1	Wheat	plasma membrane	63.71	8.35
Zm00001d050259_P002	Maize	plasma membrane	66.13	8.33
HORVU4Hr1G087670.8	Barley	mitochondrion	64.52	8.33
Os08t0398300-01	Rice	plasma membrane	63.71	8.25
KXG25097	Sorghum	plasma membrane	63.71	8.25
Zm00001d020208_P003	Maize	plasma membrane	62.9	8.23
TraesCS4B01G365000.1	Wheat	plasma membrane	63.71	8.03
OQU89360	Sorghum	plasma membrane	61.29	8.02
TraesCSU01G138200.1	Wheat	plasma membrane	64.52	8.02
TraesCS5A01G534100.3	Wheat	cytosol	64.52	7.92
PGSC0003DMT400083071	Potato	plasma membrane	59.68	7.91
Os06t0589300-01	Rice	plasma membrane	60.48	7.9
HORVU5Hr1G056930.20	Barley	plasma membrane	62.1	7.88
Zm00001d036927_P001	Maize	plasma membrane, plastid	61.29	7.88
EER89983	Sorghum	plastid	59.68	7.76
TraesCS7B01G260800.1	Wheat	plastid	59.68	7.74
TraesCS3D01G368700.2	Wheat	plasma membrane	59.68	7.64
TraesCS7D01G355100.1	Wheat	plastid	58.87	7.64
HORVU7Hr1G085680.2	Barley	endoplasmic reticulum, peroxisome, plastid	59.68	7.47
GSMUA_Achr3P20510_001	Banana	plasma membrane	64.52	6.82
GSMUA_Achr7P23890_001	Banana	plasma membrane	62.9	6.67
PGSC0003DMT400074438	Potato	extracellular	9.68	4.29
PGSC0003DMT400046727	Potato	plasma membrane	32.26	4.28
PGSC0003DMT400083147	Potato	plasma membrane	27.42	3.59
PGSC0003DMT400036875	Potato	cytosol	7.26	3.42
CDX68439	Canola	nucleus	0.81	0.63
HORVU3Hr1G030470.1	Barley	cytosol, extracellular, plasma membrane	0.0	0.0
HORVU4Hr1G039510.1	Barley	cytosol	0.0	0.0
VIT_07s0095g00600.t01	Wine grape	extracellular	0.0	0.0
HORVU6Hr1G043820.1	Barley	cytosol, endoplasmic reticulum, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400083070	EnsemblPlantsGene:PGSC0003DMG400033041	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0042626
GO:GO:0055085	InterPro:ABCA	PANTHER:PTHR19229	PANTHER:PTHR19229:SF127	PGSC:PGSC0003DMG400033041	UniParc:UPI00029659A9
UniProt:M1D6F2	MapMan:35.1	:	:	:	:

Description

ABC transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400033041]

Coordinates

chr6:-:51771796..51772886

Molecular Weight (calculated)

14113.7 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.415

Length

124 amino acids

Sequence
(BLAST)

001: MDEAEYLCDR IGIFVDGNFQ CLGTSDELKA RYGGCYMFTM TTSPENGCKV EDLVKRLSPN AKKTYHLYGT QKFELPKDEV KLSDVFLTVR QAKERFSVQS
101: WGLADTTLED VFIKVATEHS ESLH

Best Arabidopsis Sequence Match ( AT3G47780.1 )
(BLAST)

001: MADPGPASFS TRANALLRKN LTYQKRNLWS NIRLIMIPFY LCILLVIIQI LFDTQVNNSA DNRCGCECIE RNRAGKCQRE LCGLEHSKPD QAFFCSIPRP
101: PLWPPLLQIP RPESRDVRGL RDDSCRRTGS CPVTILFTGN NRSLGTTVSE NLFTSSVSAN ASEILRTLAN NVLGTTVEAD FTNYLDPGIA SNLSIYNIQP
201: RCILNATFPF SFEQPPLKFE KELRCVQGSN LWTNTSKEVN DKIFKGYKKG NPEGKINEIA AAYDLLNTDR NNFNVHIWYN STYKDDAGNR LIKLIRVPRS
301: VNLVSNAYLQ FLQGPGTRML FEYVKEMPKP ETSLRLDIAS LIGPLFFTWV ILLLFPVILS SLVYEKQQHL RIIMKMHGLG DGPYWMISYA YFLTISVLYV
401: ICLMIFGSAI GLKFFRLNSY SIQFVFYFLY LNLQIALAFL VSSVFSKVKT STVASYIYVF GSGLLGLFLL NFLIEDSSFP RGWIIVMELY PGFSLYRGLY
501: ELAQFAFRGN LRGEDGMKWK DFGDSAMDDV FYIIVVEWFL ALIAAYYIDK ISSSGRNPLF FLQNPFKKSP SLRRPSLQRQ GSKVSVDMEK PDVTHESKKV
601: ERLMLESSTS HAIVCDNLKK VYPGRDGNPP KLAVRGLSLA VPSGECFGML GPNGAGKTSF INMMTGLLKP TSGTALVQGL DICNDMDRVY TSMGVCPQHD
701: LLWETLTGRE HLLFYGRLKN LKGADLNQAV EESLKSVNLF HGGVADKPAG KYSGGMKRRL SVAISLIGNP KVVYMDEPST GLDPASRKNL WTVIKRAKQN
801: TAIILTTHSM EEAEFLCDRL GIFVDGGLQC IGNPKELKGR YGGSYVFTMT TSSEHEQNVE KLIKDVSPNA KKIYHIAGTQ KFELPKEEVR ISEVFQAVEK
901: AKSNFTVFAW GLADTTLEDV FIKVVRNGQA FNVFS

Arabidopsis Description

ABCA7ABC transporter A family member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.