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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 6
  • endoplasmic reticulum 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
 plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G367700.1 Wheat plasma membrane 52.16 87.15
TraesCS7D01G355100.1 Wheat plastid 84.09 83.56
EER89983 Sorghum plastid 83.56 83.12
TraesCS7B01G260800.1 Wheat plastid 83.67 83.05
Zm00001d036927_P001 Maize plasma membrane, plastid 83.14 81.76
HORVU7Hr1G085680.2 Barley endoplasmic reticulum, peroxisome, plastid 83.46 79.92
HORVU3Hr1G030470.1 Barley cytosol, extracellular, plasma membrane 12.01 67.86
HORVU6Hr1G043820.1 Barley cytosol, endoplasmic reticulum, plasma membrane 11.8 66.67
CDX94927 Canola cytosol 8.11 64.71
HORVU4Hr1G039510.1 Barley cytosol 11.17 63.1
Os02t0107900-00 Rice cytosol 15.81 62.24
PGSC0003DMT400083070 Potato cytosol 7.9 60.48
KRH54520 Soybean plasma membrane, plastid 50.47 59.36
VIT_17s0000g05860.t01 Wine grape plasma membrane, plastid 59.22 59.22
Solyc03g113040.2.1 Tomato plastid 58.06 58.31
KRH63384 Soybean plasma membrane 44.57 58.1
Solyc06g070920.2.1 Tomato extracellular, plasma membrane 38.36 57.05
CDY02120 Canola cytosol, nucleus, plasma membrane 39.52 56.9
Solyc03g113060.2.1 Tomato extracellular 56.59 56.89
VIT_12s0055g00730.t01 Wine grape extracellular 7.59 56.69
Bra018114.1-P Field mustard cytosol, peroxisome, plasma membrane 37.41 56.44
CDY31786 Canola cytosol, nucleus, plasma membrane 39.09 56.21
CDX68440 Canola cytosol, mitochondrion 8.22 56.12
AT3G47790.1 Thale cress plasma membrane 52.79 55.6
Os08t0398300-01 Rice plasma membrane 55.53 55.07
KRH56933 Soybean plasma membrane, plastid 54.58 54.58
AT3G47750.1 Thale cress mitochondrion, plasma membrane 53.74 54.43
AT3G47760.3 Thale cress plasma membrane 53.64 54.38
Bra019513.1-P Field mustard plasma membrane 51.11 54.31
KRH03450 Soybean plasma membrane, plastid 54.58 54.3
AT3G47780.1 Thale cress plasma membrane 53.42 54.22
AT3G47740.1 Thale cress plasma membrane 53.11 54.08
CDY39546 Canola plasma membrane 53.21 54.01
CDX77421 Canola plasma membrane 53.21 54.01
CDY36930 Canola plasma membrane 53.53 53.93
Bra018113.1-P Field mustard plasma membrane 53.53 53.93
CDY24156 Canola plasma membrane 53.42 53.82
Bra033785.1-P Field mustard plasma membrane 53.42 53.82
CDY36932 Canola endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid 50.05 53.61
CDX83025 Canola plasma membrane 53.21 53.61
KRG88422 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 27.71 53.56
CDY21797 Canola plasma membrane 51.0 53.54
CDX68441 Canola plasma membrane 53.11 53.5
CDX77874 Canola plasma membrane 46.47 53.2
Bra015049.1-P Field mustard plasma membrane 50.05 53.19
AT3G47770.2 Thale cress endoplasmic reticulum, golgi, plasma membrane, plastid 51.84 53.13
Bra018115.1-P Field mustard plasma membrane 51.63 52.92
CDY24158 Canola plasma membrane 51.53 52.81
AT5G61740.1 Thale cress plasma membrane 50.05 52.26
AT5G61700.1 Thale cress plasma membrane 50.05 51.8
CDY02114 Canola plasma membrane 48.16 51.52
CDY23043 Canola cytosol, mitochondrion 27.61 51.17
CDY23039 Canola plasma membrane 47.84 51.13
Solyc06g070950.1.1 Tomato plasma membrane 47.95 51.07
CDY62599 Canola plasma membrane 46.68 50.98
PGSC0003DMT400083071 Potato plasma membrane 49.95 50.7
CDY36931 Canola plastid 49.63 50.59
CDY24157 Canola plastid 50.58 50.47
Bra012931.1-P Field mustard cytosol, peroxisome, plasma membrane 31.4 50.34
Bra033786.1-P Field mustard cytosol, mitochondrion, nucleus 15.28 48.66
Bra012927.1-P Field mustard cytosol 31.3 48.29
Os08t0398350-00 Rice cytosol 42.36 47.8
CDY23798 Canola nucleus, peroxisome, plasma membrane 18.97 46.88
VIT_18s0041g02240.t01 Wine grape plasma membrane 35.09 45.24
Os09t0360900-01 Rice plasma membrane 20.55 42.03
CDX68439 Canola nucleus 6.85 41.14
CDX68438 Canola endoplasmic reticulum, extracellular, plasma membrane 18.23 40.61
Solyc06g070930.2.1 Tomato plastid 10.75 37.23
VIT_07s0095g00600.t01 Wine grape extracellular 2.42 33.33
Os08t0398000-01 Rice plasma membrane 23.92 23.45
Os03t0670100-01 Rice plastid 8.11 21.81
Os11t0490800-02 Rice plastid 6.43 21.11
Os06t0695800-01 Rice unclear 7.06 19.36
Os10t0434900-00 Rice cytosol, mitochondrion 2.53 17.91
Protein Annotations
MapMan:24.1.3.2.1Gene3D:3.40.50.300EntrezGene:4341405InterPro:AAA+_ATPaseInterPro:ABCAInterPro:ABC_transporter-like
InterPro:ABC_transporter_CSEMBL:AK065426ProteinID:BAD32901.1ProteinID:BAF19874.1ProteinID:BAS98408.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0043231GO:GO:0055085
InterPro:IPR003439EnsemblPlantsGene:Os06g0589300EnsemblPlants:Os06t0589300-01InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF12698
ScanProsite:PS00211PFscan:PS50893PANTHER:PTHR19229PANTHER:PTHR19229:SF141UniProt:Q69XA0SMART:SM00382
SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI00003FF29BRefSeq:XP_015641288.1SEG:seg:
Description
ABC TRANSPORTER A FAMILY MEMBER 2ABC transporter-like domain containing protein. (Os06t0589300-01)
Coordinates
chr6:-:23105298..23113054
Molecular Weight (calculated)
106255.0 Da
IEP (calculated)
8.573
GRAVY (calculated)
-0.004
Length
949 amino acids
Sequence
(BLAST)
001: MEPSAAVASR PPSFTAQTNA LLRKNLIFQK RNRKGTIRLI IVPIYLCLLL TILQRVINSV LDKPKFRCGC KCVDVNGTGS CQNVCGIQYS TLDQAGSCPI
101: PNPPEWPALL QLPRPEYRAM QESSLYAGFP DVSCRKSQSC AATIPFTGAN ETLSNIVMQN LFTSSPLSNL SDNASISSLL LGTDVPGTYT GFIEPAFVSD
201: RPIYVLRPQC KASDSVTVPI TFGDINIRKE MLCIQGLPLW RNSSAIINEE TFNGYRKGKS QEGINEIPMA YDFQDSNEKH FSVLALYNST YQNVSYVPMP
301: FGLLHISRSL NAVSNAYLQF LRGSGVKMLL AFTKEMPKQE TRLRFDFSSV IGPLFFEWVV ALLFPVMLTY LVYEKQHKLR TMMKMHGLGD GPYWIIYYAY
401: FLILSMVYLV LFVVFGSVIG LNFFKINDYS IQFVFFFSFM NLQIVLAFLT ATFFSKVNTA QAIAYLYIFG SGLIAGSLIR NFIEGGKFPK HWITVLEIIP
501: AFSLYRGLYE LGQYAIRASE AGSHGMRWSD LNDHANGMRD ALIIIILEWL VLLPVAYYLD HSASVGHKSS FLSLIKNLLK KNPTWRRVSI NEVVNDAVHV
601: EMVKQDIIKE RETVDQVLQQ QSSGYAVVCD DLKKVYHGKD GNPDKFAVRG LSLALPYGEC LGILGPNGAG KSSFISMMIG LTRPTSGNAF VREFSIQTDM
701: EKIYNSMGVC PQNDMLWEML TGREHLQFYG RLKSLNGSDL DTAVNESLRS VNLLHGGAPD KQVRKYSGGM KRRLSVAISL IGDAKVVYMD EPSTGLDPAS
801: RKSLWDAVKQ AKRDRAIVLT THSMEEAEVL CDRLCIMVDG SLQCIGTPKE LIARYGGYYV LTMTTSPEFE QEVENLARKL SPNARKVYHL SGTQKYELPK
901: QQVRIADVFM AVENFKRRTE VQAWGLADTT MEDVFVKVAK GAQSSEELS
Best Arabidopsis Sequence Match ( AT3G47780.1 )
(BLAST)
001: MADPGPASFS TRANALLRKN LTYQKRNLWS NIRLIMIPFY LCILLVIIQI LFDTQVNNSA DNRCGCECIE RNRAGKCQRE LCGLEHSKPD QAFFCSIPRP
101: PLWPPLLQIP RPESRDVRGL RDDSCRRTGS CPVTILFTGN NRSLGTTVSE NLFTSSVSAN ASEILRTLAN NVLGTTVEAD FTNYLDPGIA SNLSIYNIQP
201: RCILNATFPF SFEQPPLKFE KELRCVQGSN LWTNTSKEVN DKIFKGYKKG NPEGKINEIA AAYDLLNTDR NNFNVHIWYN STYKDDAGNR LIKLIRVPRS
301: VNLVSNAYLQ FLQGPGTRML FEYVKEMPKP ETSLRLDIAS LIGPLFFTWV ILLLFPVILS SLVYEKQQHL RIIMKMHGLG DGPYWMISYA YFLTISVLYV
401: ICLMIFGSAI GLKFFRLNSY SIQFVFYFLY LNLQIALAFL VSSVFSKVKT STVASYIYVF GSGLLGLFLL NFLIEDSSFP RGWIIVMELY PGFSLYRGLY
501: ELAQFAFRGN LRGEDGMKWK DFGDSAMDDV FYIIVVEWFL ALIAAYYIDK ISSSGRNPLF FLQNPFKKSP SLRRPSLQRQ GSKVSVDMEK PDVTHESKKV
601: ERLMLESSTS HAIVCDNLKK VYPGRDGNPP KLAVRGLSLA VPSGECFGML GPNGAGKTSF INMMTGLLKP TSGTALVQGL DICNDMDRVY TSMGVCPQHD
701: LLWETLTGRE HLLFYGRLKN LKGADLNQAV EESLKSVNLF HGGVADKPAG KYSGGMKRRL SVAISLIGNP KVVYMDEPST GLDPASRKNL WTVIKRAKQN
801: TAIILTTHSM EEAEFLCDRL GIFVDGGLQC IGNPKELKGR YGGSYVFTMT TSSEHEQNVE KLIKDVSPNA KKIYHIAGTQ KFELPKEEVR ISEVFQAVEK
901: AKSNFTVFAW GLADTTLEDV FIKVVRNGQA FNVFS
Arabidopsis Description
ABCA7ABC transporter A family member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.