Factsheet for VIT_17s0000g05860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54520	Soybean	plasma membrane, plastid	67.86	79.8
VIT_12s0055g00730.t01	Wine grape	extracellular	10.64	79.53
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	39.83	76.99
Solyc03g113040.2.1	Tomato	plastid	75.55	75.87
KRH63384	Soybean	plasma membrane	57.43	74.86
Solyc03g113060.2.1	Tomato	extracellular	72.39	72.78
KRH56933	Soybean	plasma membrane, plastid	69.02	69.02
VIT_07s0095g00600.t01	Wine grape	extracellular	4.95	68.12
KRH03450	Soybean	plasma membrane, plastid	68.39	68.03
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	45.31	67.4
TraesCS1A01G343000.1	Wheat	plasma membrane	66.49	66.21
TraesCS1D01G345200.1	Wheat	plasma membrane	66.28	66.07
KXG25097	Sorghum	plasma membrane	66.39	65.76
TraesCS1B01G356200.1	Wheat	plasma membrane	65.96	65.76
HORVU1Hr1G075620.5	Barley	plasma membrane	65.23	64.88
Os08t0398300-01	Rice	plasma membrane	65.33	64.79
HORVU4Hr1G087670.8	Barley	mitochondrion	64.91	64.17
TraesCS7A01G367700.1	Wheat	plasma membrane	38.36	64.08
TraesCS5D01G195700.1	Wheat	plasma membrane	63.33	63.53
Zm00001d050259_P002	Maize	plasma membrane	65.65	63.31
TraesCS4B01G365000.1	Wheat	plasma membrane	65.44	63.11
TraesCS5A01G193200.1	Wheat	plasma membrane	62.91	63.11
Zm00001d020208_P003	Maize	plasma membrane	62.28	62.34
TraesCSU01G138200.1	Wheat	plasma membrane	65.33	62.12
OQU89360	Sorghum	plasma membrane	61.96	62.03
TraesCS5B01G188600.1	Wheat	plasma membrane	61.96	61.89
HORVU5Hr1G056930.20	Barley	plasma membrane	62.8	61.0
TraesCS5A01G534100.3	Wheat	cytosol	64.91	60.99
Solyc06g070950.1.1	Tomato	plasma membrane	57.11	60.83
PGSC0003DMT400083071	Potato	plasma membrane	59.33	60.21
Os06t0589300-01	Rice	plasma membrane	59.22	59.22
TraesCS3D01G368700.2	Wheat	plasma membrane	60.06	58.88
EER89983	Sorghum	plastid	58.9	58.6
TraesCS7D01G355100.1	Wheat	plastid	58.48	58.12
TraesCS7B01G260800.1	Wheat	plastid	58.38	57.95
GSMUA_Achr7P23890_001	Banana	plasma membrane	71.34	57.86
Zm00001d036927_P001	Maize	plasma membrane, plastid	58.69	57.72
HORVU7Hr1G085680.2	Barley	endoplasmic reticulum, peroxisome, plastid	58.06	55.6
VIT_18s0041g02240.t01	Wine grape	plasma membrane	42.47	54.76
GSMUA_Achr3P20510_001	Banana	plasma membrane	67.23	54.39
HORVU3Hr1G030470.1	Barley	cytosol, extracellular, plasma membrane	7.9	44.64
HORVU6Hr1G043820.1	Barley	cytosol, endoplasmic reticulum, plasma membrane	7.69	43.45
Solyc06g070930.2.1	Tomato	plastid	12.43	43.07
HORVU4Hr1G039510.1	Barley	cytosol	7.38	41.67
VIT_17s0000g05850.t01	Wine grape	plasma membrane	25.18	24.95
VIT_11s0052g00540.t01	Wine grape	cytosol	6.85	24.25
VIT_14s0068g01730.t01	Wine grape	plastid	6.85	22.89
VIT_04s0023g00290.t01	Wine grape	plastid	8.01	22.29
VIT_08s0007g08730.t01	Wine grape	mitochondrion, plasma membrane	22.02	11.11

Protein Annotations

EntrezGene:100253652	wikigene:100253652	MapMan:24.1.3.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCA
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB43106	ProteinID:CCB43106.1	ncoils:Coil	UniProt:F6GT97
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0043231	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100253652	wikigene:LOC100253652	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF141
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00015CC6F8	ArrayExpress:VIT_17s0000g05860	EnsemblPlantsGene:VIT_17s0000g05860
EnsemblPlants:VIT_17s0000g05860.t01	RefSeq:XP_002274303	RefSeq:XP_002274303.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:6396552..6408577

Molecular Weight (calculated)

105479.0 Da

IEP (calculated)

7.732

GRAVY (calculated)

0.009

Length

949 amino acids

Sequence
(BLAST)

001: MADSSSGPAS FWTQANALLR KNLTFQKRNI RTNIRLVSFP ILLCVLLVVI QKLVNSELDK AENKCGCISV TNENGQTEKR CGIQYSTLDQ VGTCPIPSPP
101: EWPALLQVPA PEYRAVRADF IQFTDLPDDS CRRTGSCPAT ILFTGNNRSL GLTLAGNMFS SSSSLNSSNI LGNLSNFVLG SESMPETTNF LDPAFFSDLP
201: IYHVEPQCAP NSTFSVSFSL ASTNVQQEIQ CVQGLHLWRN SSSEINDELF KGYHKGNSER KINEIVAAYD FLNSNGNNFN VSIWYNSTYK NDAGASSIAL
301: VRVPRSVNLA SNAYLQLVQG DGVKMVLDFI KEMPKPETQV RLDLSSVLGT LFFTWVILQL FPVVLTSLVY EKQQNLRIMM KMHGLGDGPY WMISYAYFLV
401: ISSIYMLCFV IFGSVIGLKF FTLNDYSIQL VFYFIYINLQ ISLAFLLAAA FSNVKTATVL GYICVFGTGL LGGFLFQFFI QDTSFPNGWI IVMELYPGFS
501: LYRGLYEFAQ YSFTGNYMGT DGMRWGDLSD STNGMRDVLI IMFVEWLIVL FVAYYIDQVL SSGNGVKRSP LFFLQNFRKK KPMSSFRKPS LKRQGSKVFV
601: KMEKADVSQE REKVEQLLLE SGANHAIICD NLRKVYPGRD GNPEKIAVKG LSLALSHGEC FGMLGPNGAG KTSFISMMIG LTVPTSGTAF VEGLDIRIDM
701: DGIYTSMGVC PQHDLLWETL TGREHLLFYG RLKNLKGAAL TQAVEESLKS VNLFHGGVGD KQAGKYSGGM KRRLSVAISL IGDPKVVYMD EPSTGLDPAS
801: RNNLWNVVKR AKQGRAIILT THSMEEAEVL CDRLGIFVDG SLQCIGNPKE LKARYGGSYV FTMTTSSNHE EEVENLVRQL SPNTNKIYQI SGTQKFELPK
901: QEVRIADVFQ AVENAKSRFT VQAWGLADTT LEDVFIKVAR GAQAFDVLS

Best Arabidopsis Sequence Match ( AT3G47780.1 )
(BLAST)

001: MADPGPASFS TRANALLRKN LTYQKRNLWS NIRLIMIPFY LCILLVIIQI LFDTQVNNSA DNRCGCECIE RNRAGKCQRE LCGLEHSKPD QAFFCSIPRP
101: PLWPPLLQIP RPESRDVRGL RDDSCRRTGS CPVTILFTGN NRSLGTTVSE NLFTSSVSAN ASEILRTLAN NVLGTTVEAD FTNYLDPGIA SNLSIYNIQP
201: RCILNATFPF SFEQPPLKFE KELRCVQGSN LWTNTSKEVN DKIFKGYKKG NPEGKINEIA AAYDLLNTDR NNFNVHIWYN STYKDDAGNR LIKLIRVPRS
301: VNLVSNAYLQ FLQGPGTRML FEYVKEMPKP ETSLRLDIAS LIGPLFFTWV ILLLFPVILS SLVYEKQQHL RIIMKMHGLG DGPYWMISYA YFLTISVLYV
401: ICLMIFGSAI GLKFFRLNSY SIQFVFYFLY LNLQIALAFL VSSVFSKVKT STVASYIYVF GSGLLGLFLL NFLIEDSSFP RGWIIVMELY PGFSLYRGLY
501: ELAQFAFRGN LRGEDGMKWK DFGDSAMDDV FYIIVVEWFL ALIAAYYIDK ISSSGRNPLF FLQNPFKKSP SLRRPSLQRQ GSKVSVDMEK PDVTHESKKV
601: ERLMLESSTS HAIVCDNLKK VYPGRDGNPP KLAVRGLSLA VPSGECFGML GPNGAGKTSF INMMTGLLKP TSGTALVQGL DICNDMDRVY TSMGVCPQHD
701: LLWETLTGRE HLLFYGRLKN LKGADLNQAV EESLKSVNLF HGGVADKPAG KYSGGMKRRL SVAISLIGNP KVVYMDEPST GLDPASRKNL WTVIKRAKQN
801: TAIILTTHSM EEAEFLCDRL GIFVDGGLQC IGNPKELKGR YGGSYVFTMT TSSEHEQNVE KLIKDVSPNA KKIYHIAGTQ KFELPKEEVR ISEVFQAVEK
901: AKSNFTVFAW GLADTTLEDV FIKVVRNGQA FNVFS

Arabidopsis Description

ABCA7ABC transporter A family member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.