Factsheet for VIT_17s0000g05850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 4
cytosol 1
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046727	Potato	plasma membrane	70.88	72.7
CDY24159	Canola	golgi, mitochondrion	70.15	71.72
GSMUA_Achr7P23880_001	Banana	plasma membrane	71.29	71.29
KRH54517	Soybean	plasma membrane	71.71	71.04
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	72.13	70.3
CDY36933	Canola	golgi, mitochondrion	70.77	70.26
Bra018116.1-P	Field mustard	golgi, mitochondrion	72.13	70.08
AT5G61730.2	Thale cress	plasma membrane, plastid	68.89	69.47
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	12.32	69.41
AT5G61690.2	Thale cress	plasma membrane	68.68	69.05
KRH63387	Soybean	plasma membrane, plastid	69.1	68.81
Bra012928.1-P	Field mustard	plasma membrane	66.39	68.61
CDY23040	Canola	plasma membrane	68.27	68.55
CDY02116	Canola	plasma membrane	59.71	68.1
CDY64180	Canola	plasma membrane	44.47	67.94
TraesCS1B01G356100.2	Wheat	plasma membrane	68.27	67.84
TraesCS1A01G342900.2	Wheat	plasma membrane	68.37	67.81
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	67.85	67.64
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	68.06	67.56
CDY62594	Canola	cytosol	32.05	67.18
CDY23042	Canola	plasma membrane	65.66	67.13
CDX68435	Canola	mitochondrion, plastid	18.27	67.05
Os08t0398000-01	Rice	plasma membrane	67.64	66.94
CDY23800	Canola	plasma membrane	63.47	66.45
HORVU1Hr1G075640.9	Barley	golgi	67.75	66.29
Zm00001d032279_P005	Maize	golgi, plastid	67.12	66.29
CDY52820	Canola	cytosol, nucleus, plasma membrane	60.02	65.49
GSMUA_Achr3P20560_001	Banana	plastid	19.31	64.46
CDY02118	Canola	plasma membrane	65.55	63.12
CDY62596	Canola	cytosol, plasma membrane, vacuole	20.04	62.54
Bra012930.1-P	Field mustard	plasma membrane	59.08	62.33
CDX68434	Canola	plasma membrane	45.2	60.99
Solyc06g070960.1.1	Tomato	plasma membrane	58.14	60.15
VIT_12s0055g00730.t01	Wine grape	extracellular	3.76	28.35
VIT_17s0000g05860.t01	Wine grape	plasma membrane, plastid	24.95	25.18
VIT_18s0041g02240.t01	Wine grape	plasma membrane	18.58	24.18
VIT_14s0068g01730.t01	Wine grape	plastid	6.58	22.18
VIT_04s0023g00290.t01	Wine grape	plastid	7.62	21.41
VIT_11s0052g00540.t01	Wine grape	cytosol	5.95	21.27
VIT_07s0095g00600.t01	Wine grape	extracellular	1.36	18.84
VIT_08s0007g08730.t01	Wine grape	mitochondrion, plasma membrane	27.35	13.93

Protein Annotations

EntrezGene:100258795	wikigene:100258795	MapMan:24.1.3.2.1	Gene3D:3.40.50.300	MapMan:5.8.5	InterPro:AAA+_ATPase
InterPro:ABCA	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CBI15254	ProteinID:CBI15254.3	UniProt:D7SIE3
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0043231	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100258795	wikigene:LOC100258795	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC64007	TMHMM:TMhelix	UniParc:UPI00015CC5EF	ArrayExpress:VIT_17s0000g05850
EnsemblPlantsGene:VIT_17s0000g05850	EnsemblPlants:VIT_17s0000g05850.t01	unigene:Vvi.298	RefSeq:XP_002274102	RefSeq:XP_002274102.1	RefSeq:XP_002274135
RefSeq:XP_002274135.1	RefSeq:XP_003634313	RefSeq:XP_003634313.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:6379585..6387501

Molecular Weight (calculated)

106828.0 Da

IEP (calculated)

7.058

GRAVY (calculated)

0.058

Length

958 amino acids

Sequence
(BLAST)

001: MDLQRGLPLL IQQFGALFKK NFLLSWRNKG ATFLQLFSSL FFIFLIFCIG KAIRSRFSSS TEYENVFDPK PLVSLPIPPC EDKFYTKLPC FDFVWSGNGS
101: AKIQSIVNRI MTNNPGRPIP SDKVKSFSTR DEVDAWLYSD PMRCPGALHF VETNATVISY GLQTNSTPVS KRGHYEDPTF KFQIPLQIVA EREMARSLIG
201: DPNFNWTARF KEFAHPAIEE FSVVAVVGPT FFLAIAMFGF VIQISSLITE KELKLRQAMT MMGLYDSAYW LSWLTWEGII ILIASLFIVL FGMMFQFDFF
301: LNNSFSVVFL LFFLFQLNMI GYAFMLSSFI SKSSSSTIIG FCIFIFGFFS QLVTIFGFPY SNNFPNFYRI IWSLFPPNLL AEALSLLADA TSTPQDPGIS
401: WSKRADCAPN DLDCVITIND IYIWLTATFF LWFLLAIYFD NIIPNSSGVR KSLFYFLKPG YWTGRGGNKV EEGGICSCIG SIPSLEDITP DDEDVLEEEN
501: KVKQQRREGV ADPNIAVQIC GLAKTYPGTT NIGCCKCKKT SPYHALKGLW VNFPKNQLFC LLGPNGAGKT TTINCLTGIT PVTEGDALIY GYSIRSSVGM
601: SNIRRIIGVC PQFDILWNSL SGQEHLELFS SIKGLPPSSV KSVAQKSLAE VKLTQAAKMR AGSYSGGMKR RLSVAIALIG DPKLVIMDEP TTGMDPITRR
701: HVWDIIENAK KGRAIVLTTH SMEEADILSD RIGIMAKGRL RCIGTSIRLK SRFGTGFIAH VSFTGSTNGN TRPNDDAVTT PYHEAVKQFF KYHLDIVPKE
801: ENKAFLTFVI PHDREARLTK FFGELQDRET EFGIADIQLG LTTLEEVFLN IAKKAELESA AAEGSMESLT LTSGIVVQVP VGARFVGIPG TESAENPRGV
901: MVEVQWEQDD TGSLCISEHS PETPVPPGIP QMPSLRRRSR TVQGVVIDPN QIVSNDDR

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.