CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032279_P005	Maize	golgi, plastid	96.98	96.08
Os08t0398000-01	Rice	plasma membrane	88.97	88.33
TraesCS1B01G356100.2	Wheat	plasma membrane	87.62	87.34
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	87.3	86.94
TraesCS1A01G342900.2	Wheat	plasma membrane	86.99	86.54
HORVU1Hr1G075640.9	Barley	golgi	86.78	85.19
GSMUA_Achr7P23880_001	Banana	plasma membrane	74.71	74.95
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	12.07	68.24
GSMUA_Achr3P20560_001	Banana	plastid	20.29	67.94
VIT_17s0000g05850.t01	Wine grape	plasma membrane	67.64	67.85
PGSC0003DMT400046727	Potato	plasma membrane	65.66	67.56
CDY24159	Canola	golgi, mitochondrion	64.41	66.06
CDY36933	Canola	golgi, mitochondrion	65.35	65.08
CDY64180	Canola	plasma membrane	42.35	64.91
Bra018116.1-P	Field mustard	golgi, mitochondrion	66.6	64.91
KRH54517	Soybean	plasma membrane	65.24	64.84
CDY62594	Canola	cytosol	30.59	64.33
AT5G61730.2	Thale cress	plasma membrane, plastid	63.48	64.21
AT5G61690.2	Thale cress	plasma membrane	63.58	64.11
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	65.35	63.89
CDY02116	Canola	plasma membrane	55.78	63.81
CDY23042	Canola	plasma membrane	61.81	63.39
CDX68435	Canola	mitochondrion, plastid	17.17	63.22
Bra012928.1-P	Field mustard	plasma membrane	60.98	63.21
CDY23040	Canola	plasma membrane	62.75	63.21
CDY23800	Canola	plasma membrane	59.94	62.95
KRH63387	Soybean	plasma membrane, plastid	62.75	62.68
CDY52820	Canola	cytosol, nucleus, plasma membrane	55.78	61.05
CDY02118	Canola	plasma membrane	61.39	59.3
Bra012930.1-P	Field mustard	plasma membrane	54.53	57.71
CDY62596	Canola	cytosol, plasma membrane, vacuole	18.42	57.65
CDX68434	Canola	plasma membrane	42.56	57.61
Solyc06g070960.1.1	Tomato	plasma membrane	54.53	56.59
OQU84622	Sorghum	cytosol, peroxisome, plasma membrane	21.12	28.51
OQU80391	Sorghum	mitochondrion	23.73	24.33
KXG25097	Sorghum	plasma membrane	23.93	24.01
KXG29778	Sorghum	plasma membrane	23.83	24.0
EES04733	Sorghum	plasma membrane	23.62	23.82
OQU89360	Sorghum	plasma membrane	23.41	23.73
EER89983	Sorghum	plastid	23.2	23.38
KXG28389	Sorghum	plastid	6.56	23.16
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	5.93	21.27
OQU80389	Sorghum	mitochondrion, plasma membrane	22.79	20.47
EER96343	Sorghum	plastid	7.28	19.83

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	MapMan:5.8.5	EntrezGene:8070023	InterPro:AAA+_ATPase	InterPro:ABCA
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	UniProt:C5YKN4	EnsemblPlants:EES14950	ProteinID:EES14950	ProteinID:EES14950.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0043231
GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193	SMART:SM00382	EnsemblPlantsGene:SORBI_3007G119800	SUPFAM:SSF52540
unigene:Sbi.7087	TMHMM:TMhelix	UniParc:UPI0001A87A1A	RefSeq:XP_002445455.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:51494237..51500770

Molecular Weight (calculated)

106867.0 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.001

Length

961 amino acids

Sequence
(BLAST)

001: MELRSGGALA WQQYRALLRK NATLTWRNRR SAALQLFSSL VFIFLIFCID RAVRSRFSST TAYRNVPDPE PLVAPPIPPC EDKFFIKSPC YDFLWSDGGS
101: NRIRGIVDAI RKNNPGRPIP PEKVLGFRTP DDVDAWLFQN PMRCPGALHF QDINPTQIKY GIQTNSTPVA RRGTYEDPTF KFQIPLQVAA EREMARLLIG
201: DPNFSWTVGF KEFAHPATET FSTIAQAGPT FFLAIAMFGF VFQISALVSE KELKLRQAMS TMGLYESAYW LSWFTWEALL TTISALFTVL FGMMFQFDFF
301: LHNNFGILFL LFFLFQLNML SFAFMISTFV AKAASATTVG FAIFIIGFLT QLVTTFGFPY SADYKKLYRT LWSLFPPDLF AKALNILGKA TATPEDKGIS
401: WNQRGECPSF ETDCVITIDD IYKWLISTFF LWFVLAIYFD NILPNVNGVR KSVFYFLMPS YWTGKGGKME EGGLFSFFGS SRPADDATPT DEDVLAEQNL
501: VKEQAANNAV DPGVAVQIHG LRKTYPGTFS IGCCKCSKSK PFHSVKGLWV NLEKDQLFCL LGPNGAGKTT TISCLTGITP ITGGDAFIYG HSVRSTVGMS
601: NIRRMIGVCP QFDILWDALT AKEHMELFAS IKGLPPAAIT SVAEESLAKV KLSQVTNARA GSYSGGMKRR LSVAIALIGD PKLVFLDEPT TGMDPITRRH
701: VWDIIEEAKK GRAIVLTTHS MEEADILGDR IAIMAKGKLR CIGTSIRLKS KFGTGYIANV NFSGNGHMQS PNINSITEAL ANPNIEAVKW FFKERLDINP
801: KEESKTFLTF VIPHHKESLL TRFFGELQDR EGEFGISDIQ LGLTTLEEVF LNIAKQAELE SSTAEGTLVT LNLTSGATIQ IPKGARFVGI PGTETEEHPR
901: GLMVEVYWDQ DENGSLCISG HSDEMPVPVH AEPRRPPSLS RRASMGRGGP VGYVIDLNQA P

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.