CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G399500.1	Wheat	plastid	82.72	84.27
TraesCS3D01G393600.2	Wheat	plastid	83.09	81.88
TraesCS3B01G432400.1	Wheat	plastid	81.99	81.39
HORVU3Hr1G089880.8	Barley	plastid	79.78	79.78
Zm00001d007328_P003	Maize	plastid	88.24	79.21
Os11t0490800-02	Rice	plastid	77.57	73.01
CDX69605	Canola	plastid	65.44	64.96
Bra008779.1-P	Field mustard	plastid	65.07	64.6
CDY58413	Canola	cytosol, plastid	64.71	64.23
Solyc02g068180.2.1	Tomato	plastid	63.97	63.5
AT5G14100.1	Thale cress	plastid	64.34	62.95
VIT_14s0068g01730.t01	Wine grape	plastid	63.97	61.27
GSMUA_Achr1P13520_001	Banana	plastid	70.22	61.02
KRG94568	Soybean	mitochondrion	57.72	60.15
TraesCS3A01G399400.1	Wheat	cytosol	41.91	45.06
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	26.84	27.24
EER96343	Sorghum	plastid	25.0	19.26
OQU84622	Sorghum	cytosol, peroxisome, plasma membrane	26.1	9.97
OQU80391	Sorghum	mitochondrion	25.37	7.36
KXG29778	Sorghum	plasma membrane	25.37	7.23
OQU89360	Sorghum	plasma membrane	24.63	7.07
EES04733	Sorghum	plasma membrane	24.63	7.03
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	23.16	6.56
KXG25097	Sorghum	plasma membrane	22.79	6.47
OQU80389	Sorghum	mitochondrion, plasma membrane	24.63	6.26
EER89983	Sorghum	plastid	21.69	6.18

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6PRW0	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	EnsemblPlants:KXG28389	ProteinID:KXG28389	ProteinID:KXG28389.1
ProteinID:KXG28390.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR43553	PANTHER:PTHR43553:SF12
SMART:SM00382	EnsemblPlantsGene:SORBI_3005G117300	SUPFAM:SSF52540	UniParc:UPI0002207150	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:51623378..51627338

Molecular Weight (calculated)

30171.5 Da

IEP (calculated)

8.051

GRAVY (calculated)

-0.111

Length

272 amino acids

Sequence
(BLAST)

001: MLAAAATAVA IPPAASHCFP ANTARKWRIS WRCRAARVEA GYSQLEVRKV TYRPPGTEQN LLKEINLSLR EKSFGLIFGR SGSGKTTLLQ LLAGLSEPTS
101: GSVCIQKYDD TGNPIGLPEL LTSQRVGIVF QFPERYFLAD TVLEEVTFGW PRQKADLRLK EQLALNLQNA FNSVGLTTIS LDEDPQALSG GFKRRLALAI
201: QLVQTPDLLL LDEPLAGLDW KARADVVNLL KDLKKEHTIL VVSHDLRELY PLVDYSWRME MGGSLKEEGL PV

Best Arabidopsis Sequence Match ( AT5G14100.1 )
(BLAST)

001: MAVSTFSSPT PVFGIAEPPA SFSSTAIGWK QPLRFRRTKK PRVISCDYSC IEVRDVCYRP PGTQLNILNG VNFSLREKSF GLIFGKSGSG KTTLLQLLAG
101: LNKPTSGSIC IQGYGDDGQP KADPDLLPTE KVGIVFQFPE RFFVADNVLD EITFGWPRQK GSLQLKEQLT SNLQRAFNWV GLDSIPLDKD PQLLSGGYKR
201: RLALAIQLVQ TPDLLILDEP LAGLDWKARA DVAKLLKHLK KELTLLVVSH DLRELAALVD QSWRMETGGV LVAERPPL

Arabidopsis Description

ABCI11ABC transporter I family member 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.