Factsheet for TraesCS3D01G393600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G399500.1	Wheat	plastid	92.39	95.51
TraesCS3B01G432400.1	Wheat	plastid	92.39	93.07
HORVU3Hr1G089880.8	Barley	plastid	87.32	88.6
KXG28389	Sorghum	plastid	81.88	83.09
Os11t0490800-02	Rice	plastid	77.9	74.39
Zm00001d007328_P003	Maize	plastid	75.36	68.65
Bra008779.1-P	Field mustard	plastid	64.49	64.96
CDX69605	Canola	plastid	64.49	64.96
CDY58413	Canola	cytosol, plastid	64.13	64.6
Solyc02g068180.2.1	Tomato	plastid	63.77	64.23
VIT_14s0068g01730.t01	Wine grape	plastid	65.22	63.38
AT5G14100.1	Thale cress	plastid	62.68	62.23
KRG94568	Soybean	mitochondrion	58.7	62.07
GSMUA_Achr1P13520_001	Banana	plastid	67.75	59.74
TraesCS3A01G399400.1	Wheat	cytosol	44.93	49.01
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	24.64	25.86
TraesCS4D01G332100.1	Wheat	cytosol	25.72	24.83
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	24.64	17.22
TraesCS6D01G170100.1	Wheat	plastid	28.26	8.34
TraesCS5D01G195700.1	Wheat	plasma membrane	26.45	7.72
TraesCS1D01G345300.1	Wheat	mitochondrion, plasma membrane	25.72	7.5
TraesCS1D01G345200.1	Wheat	plasma membrane	25.36	7.35
TraesCS3D01G368700.2	Wheat	plasma membrane	24.64	7.02
TraesCS7D01G355100.1	Wheat	plastid	23.55	6.81
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	23.55	6.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016787
GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR43553
PANTHER:PTHR43553:SF12	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G393600	EnsemblPlants:TraesCS3D01G393600.2	TIGR:cd03225
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:508557526..508560362

Molecular Weight (calculated)

30941.7 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.068

Length

276 amino acids

Sequence
(BLAST)

001: MLAVANVAFP PVFSPRPFKM TRRFSWRYRA ERVSAGYSQL EVNFFLAPLV VRKVSYRPPG TEQNLLNETS LSLREKSFGL IFGRSGSGKT TLLQLLAGLS
101: EPTSGSICIQ KYDDSGNPIG LSEVLASQRV GIVFQFPERY FLSDTILEEV TFGWPRQKAD ILLREQLTLK LQKAINSVGL SAISLDKDPQ SLSGGFKRRL
201: ALAIQLVQTP DLLLLDEPLA GLDWKARADV VNLLKDLKKD HTILVVSHDL RELYPLVDRS WRMEMGGVLK EEPLPV

Best Arabidopsis Sequence Match ( AT5G14100.1 )
(BLAST)

001: MAVSTFSSPT PVFGIAEPPA SFSSTAIGWK QPLRFRRTKK PRVISCDYSC IEVRDVCYRP PGTQLNILNG VNFSLREKSF GLIFGKSGSG KTTLLQLLAG
101: LNKPTSGSIC IQGYGDDGQP KADPDLLPTE KVGIVFQFPE RFFVADNVLD EITFGWPRQK GSLQLKEQLT SNLQRAFNWV GLDSIPLDKD PQLLSGGYKR
201: RLALAIQLVQ TPDLLILDEP LAGLDWKARA DVAKLLKHLK KELTLLVVSH DLRELAALVD QSWRMETGGV LVAERPPL

Arabidopsis Description

ABCI11ABC transporter I family member 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.