Factsheet for TraesCS5D01G377300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G369900.1	Wheat	plastid	86.58	95.8
TraesCS5A01G367900.1	Wheat	golgi	87.59	90.81
HORVU5Hr1G091750.1	Barley	plastid	85.57	87.34
Os03t0670100-01	Rice	plastid	71.14	79.6
EER96343	Sorghum	plastid	70.89	79.32
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	57.97	77.36
Zm00001d003145_P001	Maize	mitochondrion	24.3	76.19
Zm00001d019644_P003	Maize	plastid	70.89	73.88
Bra022481.1-P	Field mustard	plastid	59.75	71.73
CDY16404	Canola	plastid	59.75	71.73
CDY57805	Canola	plastid	59.49	71.43
Zm00001d047131_P001	Maize	plastid	25.82	70.34
AT1G65410.1	Thale cress	plastid	60.25	68.99
VIT_04s0023g00290.t01	Wine grape	plastid	59.49	68.92
KRH40333	Soybean	plastid	59.75	68.41
Solyc04g056650.2.1	Tomato	plastid	57.97	65.43
KRH00900	Soybean	plastid	58.23	58.23
CDY39288	Canola	cytosol	25.32	50.51
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	18.23	27.38
TraesCS3D01G393600.2	Wheat	plastid	17.22	24.64
TraesCS4D01G332100.1	Wheat	cytosol	17.72	24.48
TraesCS1D01G345300.1	Wheat	mitochondrion, plasma membrane	18.73	7.81
TraesCS6D01G170100.1	Wheat	plastid	18.23	7.7
TraesCS7D01G355100.1	Wheat	plastid	17.97	7.43
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	17.22	7.05
TraesCS1D01G345200.1	Wheat	plasma membrane	16.96	7.04
TraesCS5D01G195700.1	Wheat	plasma membrane	16.46	6.87
TraesCS3D01G368700.2	Wheat	plasma membrane	16.71	6.82

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5D01G377300	EnsemblPlants:TraesCS5D01G377300.1	TIGR:cd03261	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:449274709..449280823

Molecular Weight (calculated)

42205.8 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.107

Length

395 amino acids

Sequence
(BLAST)

001: MLTDAGCGPW SRHTTPPREE EDFPPTSLFL LHPPPSATMA SPPSAAPAAA LRCAGVHVGC GLLPRPADAP CLRAALPFRL GVLSSRTCRA GAGVVVSATR
101: SPGLGNAGNL REGSNLSKNW DLSRQIGDEH GVLIECRDVH KSFGDKHVLQ GVSFKIRHGE AVGIIGPSGT GKSTILKVMA GLLAPDKGEV FICGKKRQGL
201: VSDEDISGLR IGLVFQSAAL FDSLNVRENV GFLLYENSKL SEERIGELVT ETLAAVGLKG VEERMPSELS GGMKKRVALA RSIINDDTKE TIEPEALLYD
301: EPTAGLDPIA STVVEDLIRS MHVTGKDAMG KPGKIASYAV VTHQHSTIRR AVDRLLFLHE GKIVWEGMTE EFTTSTNPIV QQFASGSLDG PIRYF

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.