Factsheet for Solyc04g056650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	64.0	75.68
CDY16404	Canola	plastid	70.57	75.08
Bra022481.1-P	Field mustard	plastid	70.29	74.77
CDY57805	Canola	plastid	70.29	74.77
VIT_04s0023g00290.t01	Wine grape	plastid	72.57	74.49
KRH40333	Soybean	plastid	72.57	73.62
Zm00001d003145_P001	Maize	mitochondrion	26.0	72.22
AT1G65410.1	Thale cress	plastid	70.29	71.3
EER96343	Sorghum	plastid	68.29	67.71
Zm00001d047131_P001	Maize	plastid	27.71	66.9
Os03t0670100-01	Rice	plastid	66.86	66.29
TraesCS5B01G369900.1	Wheat	plastid	65.43	64.15
Zm00001d019644_P003	Maize	plastid	68.57	63.32
KRH00900	Soybean	plastid	70.29	62.28
TraesCS5A01G367900.1	Wheat	golgi	65.71	60.37
HORVU5Hr1G091750.1	Barley	plastid	65.14	58.91
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	65.43	57.97
CDY39288	Canola	cytosol	28.57	50.51
Solyc06g068600.2.1	Tomato	cytosol	15.14	28.65
Solyc03g117810.2.1	Tomato	cytosol	21.14	28.14
Solyc02g068180.2.1	Tomato	plastid	19.43	24.82
Solyc03g113080.2.1	Tomato	cytosol	12.0	11.73
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	20.29	11.13
Solyc03g113040.2.1	Tomato	plastid	23.43	8.68
Solyc03g113060.2.1	Tomato	extracellular	22.29	8.26
Solyc06g070950.1.1	Tomato	plasma membrane	20.86	8.19
Solyc06g070940.2.1	Tomato	plasma membrane	19.14	7.1
Solyc06g070960.1.1	Tomato	plasma membrane	18.29	6.91
Solyc03g113070.2.1	Tomato	plasma membrane	6.0	3.65
Solyc04g015970.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	18.57	3.4
Solyc06g070930.2.1	Tomato	plastid	0.57	0.73

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:K4BSW3	InterPro:P-loop_NTPase
PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g056650.2	EnsemblPlants:Solyc04g056650.2.1	UniParc:UPI0002765E6A	:	:

Description

No Description!

Coordinates

chr4:-:54630995..54642388

Molecular Weight (calculated)

38021.9 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.015

Length

350 amino acids

Sequence
(BLAST)

001: MVSFVGSVMS PAVNFCKSNG VASTSSSSYM KTFFPNFDLG KPLLLRSLTN RKDKWTVCAC VAPPRDYKAA DSDRVLNTKF NPEDDSDVLI ECRNVCKSFG
101: DKHILRGVSL KIRHGEAVGI IGPSGTGKST ILKIMAGLLA PDKGEVLIRG KLRNGLVSDD EISGLRIGLV FQSAALFDSL TVRENVGFLL YENSAMPEDQ
201: IAQLVTETLA AVGLKEVEDR LPSELSGGMK KRVALARSII FDTTKDVVEP EVLLYDEPTA GLDPIASTVV EDLIRSVHVA GEDALGKPGK IASYVVVTHQ
301: HSTIKRAVDR LIFLYEGKVV WQGMTHEFST STNPIVRQFA SGSLDGPIRY

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.