Factsheet for TraesCS5B01G369900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G367900.1	Wheat	golgi	93.84	87.93
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	95.8	86.58
HORVU5Hr1G091750.1	Barley	plastid	91.32	84.24
EER96343	Sorghum	plastid	78.15	79.04
Os03t0670100-01	Rice	plastid	78.15	79.04
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	64.15	77.36
Zm00001d003145_P001	Maize	mitochondrion	26.61	75.4
Zm00001d019644_P003	Maize	plastid	77.87	73.35
Bra022481.1-P	Field mustard	plastid	66.67	72.34
CDY16404	Canola	plastid	66.67	72.34
CDY57805	Canola	plastid	66.39	72.04
Zm00001d047131_P001	Maize	plastid	28.57	70.34
AT1G65410.1	Thale cress	plastid	66.95	69.28
VIT_04s0023g00290.t01	Wine grape	plastid	66.11	69.21
KRH40333	Soybean	plastid	66.11	68.41
Solyc04g056650.2.1	Tomato	plastid	64.15	65.43
KRH00900	Soybean	plastid	64.43	58.23
CDY39288	Canola	cytosol	28.29	51.01
TraesCS7B01G327900.1	Wheat	cytosol, golgi, mitochondrion	20.45	28.08
TraesCS4B01G315100.1	Wheat	cytosol	19.89	27.0
TraesCS4B01G336400.1	Wheat	cytosol, plastid	20.45	25.7
TraesCS3B01G432400.1	Wheat	plastid	19.05	24.82
TraesCS6B01G211300.1	Wheat	cytosol, peroxisome, plasma membrane	19.05	8.56
TraesCS1B01G356300.1	Wheat	mitochondrion	19.89	7.52
TraesCS1B01G356200.1	Wheat	plasma membrane	18.77	7.04
TraesCS7B01G260800.1	Wheat	plastid	18.49	6.9
TraesCS5B01G188600.1	Wheat	plasma membrane	18.21	6.84
TraesCS1B01G356100.2	Wheat	plasma membrane	17.93	6.64
TraesCS4B01G365000.1	Wheat	plasma membrane	18.21	6.61

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5B01G369900	EnsemblPlants:TraesCS5B01G369900.1	TIGR:cd03261	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:548721435..548725182

Molecular Weight (calculated)

38099.9 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.096

Length

357 amino acids

Sequence
(BLAST)

001: MASPPTAAPA AALRCAGAHV GRVPLPRHAG GAYLRSALPF RLGVLSSRRC RAGAGAVVSA TRSPGLGNAG NLREGSNLAK NWDLSRQIGD EHGVLIECRD
101: VHKSFGDKHV LQGVSFKIRH GEAVGIIGPS GTGKSTILKV MAGLLAPDKG EVFICGKKRQ GLVSDEDISG LRIGLVFQSA ALFDSLNVRE NVGFLLYENS
201: KLSEEQIGEL VTETLAAVGL KGVEERMPSE LSGGMKKRVA LARSIINDDT KETIEPEALL YDEPTAGLDP IASTVVEDLI RSMHVTGKDA MGKPGKIASY
301: AVVTHQHSTI RRAVDRLLFL HEGKIVWEGM TEEFTTSTNP IVQQFASGSL DGPIRYF

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.