CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16404	Canola	plastid	98.18	98.18
Bra022481.1-P	Field mustard	plastid	97.57	97.57
AT1G65410.1	Thale cress	plastid	90.88	86.67
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	67.17	74.66
Zm00001d003145_P001	Maize	mitochondrion	27.66	72.22
VIT_04s0023g00290.t01	Wine grape	plastid	74.47	71.85
KRH40333	Soybean	plastid	73.86	70.43
Solyc04g056650.2.1	Tomato	plastid	74.77	70.29
TraesCS5B01G369900.1	Wheat	plastid	72.04	66.39
EER96343	Sorghum	plastid	70.82	66.01
Os03t0670100-01	Rice	plastid	68.39	63.74
Zm00001d047131_P001	Maize	plastid	27.66	62.76
TraesCS5A01G367900.1	Wheat	golgi	72.34	62.47
Zm00001d019644_P003	Maize	plastid	70.82	61.48
KRH00900	Soybean	plastid	72.34	60.25
HORVU5Hr1G091750.1	Barley	plastid	70.21	59.69
CDY39288	Canola	cytosol	35.87	59.6
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	71.43	59.49
CDX96058	Canola	cytosol	24.01	29.92
CDY01873	Canola	cytosol	23.71	29.55
CDX69605	Canola	plastid	20.97	25.18
CDY58413	Canola	cytosol, plastid	20.67	24.82
CDX68439	Canola	nucleus	9.73	20.25
CDY23043	Canola	cytosol, mitochondrion	23.1	14.84
CDY31786	Canola	cytosol, nucleus, plasma membrane	22.8	11.36
CDY02120	Canola	cytosol, nucleus, plasma membrane	22.49	11.23
CDY62594	Canola	cytosol	15.2	10.94
CDX68436	Canola	plasma membrane	9.42	10.54
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.16	9.39
CDX94927	Canola	cytosol	3.34	9.24
CDY64180	Canola	plasma membrane	17.02	8.93
CDY62599	Canola	plasma membrane	23.4	8.86
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	23.71	8.8
CDY02114	Canola	plasma membrane	23.4	8.68
CDY23039	Canola	plasma membrane	23.1	8.56
CDY24158	Canola	plasma membrane	24.01	8.53
CDX68434	Canola	plasma membrane	18.24	8.45
CDX83025	Canola	plasma membrane	23.4	8.17
CDX68441	Canola	plasma membrane	23.4	8.17
CDX77874	Canola	plasma membrane	20.36	8.08
CDY36930	Canola	plasma membrane	23.1	8.07
CDX77421	Canola	plasma membrane	22.8	8.02
CDY39546	Canola	plasma membrane	22.8	8.02
CDY02116	Canola	plasma membrane	20.36	7.98
CDY24156	Canola	plasma membrane	22.8	7.96
CDY21797	Canola	plasma membrane	21.58	7.85
CDY36931	Canola	plastid	22.19	7.84
CDY24159	Canola	golgi, mitochondrion	21.88	7.68
CDY24157	Canola	plastid	22.19	7.68
CDY23800	Canola	plasma membrane	20.97	7.54
CDY23042	Canola	plasma membrane	20.97	7.36
CDY36933	Canola	golgi, mitochondrion	21.58	7.36
CDY23040	Canola	plasma membrane	20.67	7.13
CDY02118	Canola	plasma membrane	20.97	6.93
CDY52820	Canola	cytosol, nucleus, plasma membrane	18.24	6.83
CDX68440	Canola	cytosol, mitochondrion	2.74	6.47
CDY23798	Canola	nucleus, peroxisome, plasma membrane	6.69	5.73
CDY35403	Canola	mitochondrion, plasma membrane	20.67	3.66
CDY22536	Canola	mitochondrion, plasma membrane	20.36	3.62
CDX68435	Canola	mitochondrion, plastid	1.22	1.53
CDY02115	Canola	extracellular, mitochondrion, plasma membrane, plastid	1.52	1.37
CDY02119	Canola	endoplasmic reticulum, plasma membrane, plastid	0.61	1.12
CDY23799	Canola	cytosol, peroxisome, plasma membrane	0.61	0.98
CDY62596	Canola	cytosol, plasma membrane, vacuole	0.61	0.65
CDY24573	Canola	plasma membrane	0.3	0.63

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	GO:A0A078J2R1	UniProt:A0A078J2R1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlants:CDY57805	ProteinID:CDY57805	ProteinID:CDY57805.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00022718001
InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023
PANTHER:PTHR43023:SF3	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EE3CE5	SEG:seg	:

Description

BnaC02g45210DBnaC02g45210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2R1]

Coordinates

chrLK033607:+:13181..15379

Molecular Weight (calculated)

35905.3 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.101

Length

329 amino acids

Sequence
(BLAST)

001: MLSFSSSSLL RPSLHFQPSS HQPLAMSRRS ISPFRRKVFC CSTATKFDSL SKSGGGLREP ENDSDVLIEC RDVYKSFGDK HILKGVSFKI RHGEAVGVIG
101: PSGTGKSTIL KIMAGLLAPD KGEVYIRGKK RAGLISDEEI SGLRIGLVFQ SAALFDSLTV SENVGFLLYE NSKMSENQIS ELVTQTLAAV GLKGVENRLP
201: SELSGGMKKR VALARSLIFD TTKEVIEPEV LLYDEPTAGL DPIASTVVED LIRSVHLTGE EDSLGKPGKI ASYLVVTHQH STIQRAVDRL LFLYEGKIVW
301: QGMTHEFTTS TNPIVQQFAT GSLDGPIRY

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.