CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02119	Canola	endoplasmic reticulum, plasma membrane, plastid	79.41	90.5
CDY62599	Canola	plasma membrane	65.69	15.42
CDY23039	Canola	plasma membrane	46.08	10.59
CDY02114	Canola	plasma membrane	45.59	10.48
CDX83025	Canola	plasma membrane	41.18	8.92
CDY24158	Canola	plasma membrane	39.71	8.75
CDX68441	Canola	plasma membrane	39.71	8.6
CDY36930	Canola	plasma membrane	39.71	8.6
CDY24156	Canola	plasma membrane	39.22	8.49
CDX77421	Canola	plasma membrane	37.25	8.13
CDY39546	Canola	plasma membrane	36.76	8.02
CDY36931	Canola	plastid	36.27	7.95
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	34.31	7.9
CDY24157	Canola	plastid	36.76	7.89
CDX77874	Canola	plasma membrane	31.86	7.84
CDY21797	Canola	plasma membrane	31.86	7.19
CDY02115	Canola	extracellular, mitochondrion, plasma membrane, plastid	11.76	6.58
CDY24573	Canola	plasma membrane	4.9	6.29
CDX68435	Canola	mitochondrion, plastid	7.35	5.75
CDY62596	Canola	cytosol, plasma membrane, vacuole	6.86	4.56
CDY23798	Canola	nucleus, peroxisome, plasma membrane	6.37	3.39
CDX68436	Canola	plasma membrane	4.41	3.06
CDY23040	Canola	plasma membrane	12.25	2.62
CDY23042	Canola	plasma membrane	11.27	2.45
CDY02120	Canola	cytosol, nucleus, plasma membrane	7.84	2.43
CDY31786	Canola	cytosol, nucleus, plasma membrane	7.84	2.42
CDY02118	Canola	plasma membrane	11.27	2.31
CDY24159	Canola	golgi, mitochondrion	10.29	2.24
CDY23800	Canola	plasma membrane	9.8	2.19
CDY36933	Canola	golgi, mitochondrion	10.29	2.18
CDX68440	Canola	cytosol, mitochondrion	1.47	2.16
CDX94927	Canola	cytosol	0.98	1.68
CDY52820	Canola	cytosol, nucleus, plasma membrane	6.37	1.48
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	2.94	1.41
CDY22536	Canola	mitochondrion, plasma membrane	10.78	1.19
CDY35403	Canola	mitochondrion, plasma membrane	10.78	1.18
CDY23043	Canola	cytosol, mitochondrion	2.94	1.17
CDY01873	Canola	cytosol	0.98	0.76
CDX96058	Canola	cytosol	0.98	0.76
CDX69605	Canola	plastid	0.98	0.73
CDY64180	Canola	plasma membrane	1.96	0.64
CDY57805	Canola	plastid	0.98	0.61
CDY16404	Canola	plastid	0.98	0.61
CDY02116	Canola	plasma membrane	2.45	0.6
CDX68434	Canola	plasma membrane	1.47	0.42
CDY58413	Canola	cytosol, plastid	0.49	0.36
CDY39288	Canola	cytosol	0.0	0.0
CDY62594	Canola	cytosol	0.0	0.0
CDX68439	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY23799	EnsemblPlantsGene:GSBRNA2T00024194001	GO:A0A078GEP0	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0042626	GO:GO:0055085	InterPro:ABCA	PANTHER:PTHR19229	PANTHER:PTHR19229:SF127	ProteinID:CDY23799
ProteinID:CDY23799.1	TMHMM:TMhelix	UniParc:UPI0004EE15E7	UniProt:A0A078GEP0	MapMan:35.1	:

Description

BnaA01g21500DBnaA01g21500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEP0]

Coordinates

chrLK032149:-:224033..225510

Molecular Weight (calculated)

22671.7 Da

IEP (calculated)

7.908

GRAVY (calculated)

0.055

Length

204 amino acids

Sequence
(BLAST)

001: MDVELEYVKT NDQVDDIFTN FSFKQADPSP ASFGTQANAL LRKNLTYQRK HIWTNVRLIL VPLFLCLITL AIQHVLDALM KGVSDMTGDC KSNADLSGGI
101: CPIPKPPMLP AMLQIPQHEL RSVKTDFLPY KDLPEKSCRG TMGGSCPVTI LMTGDKQPLG KAISTNIFAT SFAVNSSDLL PTLANNILSL HSFHILFFYF
201: RVHQ

Best Arabidopsis Sequence Match ( AT5G61700.1 )
(BLAST)

001: MVNPSPASFW TQANALLRKN LTYQRKHIWT NVRLILVPLF LCLILLAIQQ VLDALMKGVS DMSNCGGNVT LPGGICPIPN PPSLPPMLQI PQHELRSVKT
101: DFFSYKDLPD KLCRETGSCP VTILFTGDKL PLGKALSANI FSTSFVVNSS DLLPTLANNV LGSTEAAGED NYEDPGIASD LPIYSIQPSC SANSTWPLSL
201: GQIQTAVKCV QGLCLWRNNS VEVNDELFKG SWRGNPAGMP NEIVAAYDLM STDRKNFNVT IWYNSTYNDE FATGQALKLV RVPRSINLIS NAYLKFLKGP
301: GTRILFEFLK EVPKEETKMN QDIASLLGPL FFTWVVLLLF PVILTSLVYE KQERLRIIMK MHGLGDGPYW MISYAYFLTI SMLYVISLVG FGSAIGLKYF
401: RRNDYSIQFV FYFIYSNLQI SLAFLVSSIF SKVKTVTVIA YILVYGTGLL GSFLFQKMIE TQSFPEEWIL AMELYPGFSL YRGLYEFSQY ASRGNGMKWQ
501: DLSDSGMGEV FCIMSVEWFL ALIVAYYIDQ VFTSGKHPFF FLVNLFKSPS SLPRRPTVQR LDSKRVFIDM DKHDVTQERE SVQKLRNEGS TGHAILCDNL
601: KKVYPGRDGN PPKMAVRGLY LSVSSGECFG MLGPNGAGKT SFISMMTGLL KPSSGTALVQ GLDICKDMNK VYTSMGVCPQ HDLLWETLTG REHLLFYGRL
701: KNIKGSDLTQ AVEESLKSVS LYDGGVGDKP AGNYSGGMKR RLSVAISLIG NPKVVYLDEP STGLDPASRK NLWNVIKRAK QNTAIILTTH SMEEAEFLCD
801: RLGIFVDGGL QCIGNSKELK SRYGGSYVFT MTTSSKHEEE VERLVESVSP NAKKIYHLAG TQKFELPKQE VRIAEVFRAV EKAKANFTVF AWGLADTTLE
901: DVFIKVARTA QAFISLS

Arabidopsis Description

ABCA12ABC transporter A family member 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.