CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23799	Canola	cytosol, peroxisome, plasma membrane	90.5	79.41
CDY62599	Canola	plasma membrane	73.74	15.19
CDY23039	Canola	plasma membrane	55.87	11.26
CDY02114	Canola	plasma membrane	55.31	11.16
CDX83025	Canola	plasma membrane	48.04	9.13
CDX68441	Canola	plasma membrane	46.93	8.92
CDY36930	Canola	plasma membrane	45.81	8.7
CDY24158	Canola	plasma membrane	44.69	8.64
CDY24156	Canola	plasma membrane	44.69	8.49
CDX77421	Canola	plasma membrane	43.02	8.24
CDY39546	Canola	plasma membrane	42.46	8.13
CDX77874	Canola	plasma membrane	36.87	7.96
CDY36931	Canola	plastid	41.34	7.95
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	39.11	7.9
CDY24157	Canola	plastid	41.9	7.89
CDY21797	Canola	plasma membrane	36.87	7.3
CDX68435	Canola	mitochondrion, plastid	8.94	6.13
CDY02115	Canola	extracellular, mitochondrion, plasma membrane, plastid	11.73	5.75
CDY24573	Canola	plasma membrane	5.03	5.66
CDY62596	Canola	cytosol, plasma membrane, vacuole	7.26	4.23
CDX68436	Canola	plasma membrane	5.59	3.4
CDY23798	Canola	nucleus, peroxisome, plasma membrane	7.26	3.39
CDY02120	Canola	cytosol, nucleus, plasma membrane	8.94	2.43
CDY31786	Canola	cytosol, nucleus, plasma membrane	8.94	2.42
CDY23042	Canola	plasma membrane	12.29	2.35
CDY23040	Canola	plasma membrane	12.29	2.31
CDY24159	Canola	golgi, mitochondrion	11.73	2.24
CDY02118	Canola	plasma membrane	12.29	2.21
CDY36933	Canola	golgi, mitochondrion	11.73	2.18
CDX68440	Canola	cytosol, mitochondrion	1.68	2.16
CDY23800	Canola	plasma membrane	10.61	2.08
CDX94927	Canola	cytosol	1.12	1.68
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	3.35	1.41
CDY52820	Canola	cytosol, nucleus, plasma membrane	6.7	1.37
CDY22536	Canola	mitochondrion, plasma membrane	12.29	1.19
CDY35403	Canola	mitochondrion, plasma membrane	12.29	1.18
CDY23043	Canola	cytosol, mitochondrion	3.35	1.17
CDX96058	Canola	cytosol	1.12	0.76
CDY01873	Canola	cytosol	1.12	0.76
CDX69605	Canola	plastid	1.12	0.73
CDY57805	Canola	plastid	1.12	0.61
CDY16404	Canola	plastid	1.12	0.61
CDY64180	Canola	plasma membrane	1.68	0.48
CDY02116	Canola	plasma membrane	2.23	0.48
CDY58413	Canola	cytosol, plastid	0.56	0.36
CDX68434	Canola	plasma membrane	1.12	0.28
CDY39288	Canola	cytosol	0.0	0.0
CDY62594	Canola	cytosol	0.0	0.0
CDX68439	Canola	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078EN44	InterPro:ABCA	EnsemblPlants:CDY02119	ProteinID:CDY02119	ProteinID:CDY02119.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00113511001
PANTHER:PTHR19229	PANTHER:PTHR19229:SF127	TMHMM:TMhelix	UniParc:UPI0004EE40E7	SEG:seg	:

Description

BnaA03g40480D

Coordinates

chrLK031932:+:238094..238874

Molecular Weight (calculated)

19708.4 Da

IEP (calculated)

8.770

GRAVY (calculated)

0.131

Length

179 amino acids

Sequence
(BLAST)

001: MADPSQASFW MQANALLRKN LTYQRKHIWT NVRLILVPLF LCLILLAIQH VLDALMKGVS DMTGDCKSNA DLSGGMCPIP NPPMLPPMLQ IPQHELRSVK
101: TDFLPYKDLP DKSCRGTMGG SCPVTILMTG EKQPLGKAIS ANIFATSFAV NSSDLLPTLA NNILSTLIPS PFFNFRVHQ

Best Arabidopsis Sequence Match ( AT5G61700.1 )
(BLAST)

001: MVNPSPASFW TQANALLRKN LTYQRKHIWT NVRLILVPLF LCLILLAIQQ VLDALMKGVS DMSNCGGNVT LPGGICPIPN PPSLPPMLQI PQHELRSVKT
101: DFFSYKDLPD KLCRETGSCP VTILFTGDKL PLGKALSANI FSTSFVVNSS DLLPTLANNV LGSTEAAGED NYEDPGIASD LPIYSIQPSC SANSTWPLSL
201: GQIQTAVKCV QGLCLWRNNS VEVNDELFKG SWRGNPAGMP NEIVAAYDLM STDRKNFNVT IWYNSTYNDE FATGQALKLV RVPRSINLIS NAYLKFLKGP
301: GTRILFEFLK EVPKEETKMN QDIASLLGPL FFTWVVLLLF PVILTSLVYE KQERLRIIMK MHGLGDGPYW MISYAYFLTI SMLYVISLVG FGSAIGLKYF
401: RRNDYSIQFV FYFIYSNLQI SLAFLVSSIF SKVKTVTVIA YILVYGTGLL GSFLFQKMIE TQSFPEEWIL AMELYPGFSL YRGLYEFSQY ASRGNGMKWQ
501: DLSDSGMGEV FCIMSVEWFL ALIVAYYIDQ VFTSGKHPFF FLVNLFKSPS SLPRRPTVQR LDSKRVFIDM DKHDVTQERE SVQKLRNEGS TGHAILCDNL
601: KKVYPGRDGN PPKMAVRGLY LSVSSGECFG MLGPNGAGKT SFISMMTGLL KPSSGTALVQ GLDICKDMNK VYTSMGVCPQ HDLLWETLTG REHLLFYGRL
701: KNIKGSDLTQ AVEESLKSVS LYDGGVGDKP AGNYSGGMKR RLSVAISLIG NPKVVYLDEP STGLDPASRK NLWNVIKRAK QNTAIILTTH SMEEAEFLCD
801: RLGIFVDGGL QCIGNSKELK SRYGGSYVFT MTTSSKHEEE VERLVESVSP NAKKIYHLAG TQKFELPKQE VRIAEVFRAV EKAKANFTVF AWGLADTTLE
901: DVFIKVARTA QAFISLS

Arabidopsis Description

ABCA12ABC transporter A family member 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.