CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62596	Canola	cytosol, plasma membrane, vacuole	65.21	77.52
CDX68435	Canola	mitochondrion, plastid	39.45	55.17
CDY23040	Canola	plasma membrane	97.81	37.42
CDY52820	Canola	cytosol, nucleus, plasma membrane	79.73	33.14
CDY23042	Canola	plasma membrane	82.47	32.12
CDY23800	Canola	plasma membrane	78.9	31.48
CDY02118	Canola	plasma membrane	82.19	30.15
CDY02116	Canola	plasma membrane	65.75	28.57
KRH63056	Soybean	extracellular, plasma membrane, vacuole	6.03	25.88
CDY24159	Canola	golgi, mitochondrion	65.21	25.4
CDY36933	Canola	golgi, mitochondrion	65.21	24.66
CDY24573	Canola	plasma membrane	10.14	23.27
CDY64180	Canola	plasma membrane	30.14	17.54
CDX68434	Canola	plasma membrane	25.21	12.96
CDY23799	Canola	cytosol, peroxisome, plasma membrane	6.58	11.76
CDY02119	Canola	endoplasmic reticulum, plasma membrane, plastid	5.75	11.73
CDY23798	Canola	nucleus, peroxisome, plasma membrane	12.05	11.46
CDX77874	Canola	plasma membrane	22.74	10.01
CDY21797	Canola	plasma membrane	21.64	8.74
CDY36930	Canola	plasma membrane	21.64	8.39
CDY24156	Canola	plasma membrane	21.37	8.28
CDY02120	Canola	cytosol, nucleus, plasma membrane	14.79	8.19
CDY31786	Canola	cytosol, nucleus, plasma membrane	14.79	8.18
CDY24158	Canola	plasma membrane	20.55	8.1
CDY24157	Canola	plastid	21.1	8.1
CDX83025	Canola	plasma membrane	20.82	8.07
CDY62599	Canola	plasma membrane	18.9	7.94
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	19.18	7.9
CDY02114	Canola	plasma membrane	19.18	7.89
CDY23039	Canola	plasma membrane	19.18	7.88
CDY36931	Canola	plastid	20.0	7.84
CDX77421	Canola	plasma membrane	20.0	7.81
CDY39546	Canola	plasma membrane	20.0	7.81
CDX68441	Canola	plasma membrane	19.45	7.54
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	7.4	6.34
CDX68436	Canola	plasma membrane	3.56	4.42
CDY22536	Canola	mitochondrion, plasma membrane	18.9	3.72
CDY35403	Canola	mitochondrion, plasma membrane	18.63	3.66
CDX68439	Canola	nucleus	1.37	3.16
CDY58413	Canola	cytosol, plastid	1.92	2.55
CDX69605	Canola	plastid	1.64	2.19
CDX68440	Canola	cytosol, mitochondrion	0.82	2.16
CDX96058	Canola	cytosol	1.37	1.89
CDY01873	Canola	cytosol	1.37	1.89
CDY57805	Canola	plastid	1.37	1.52
CDY16404	Canola	plastid	1.37	1.52
CDY39288	Canola	cytosol	0.82	1.52
CDY23043	Canola	cytosol, mitochondrion	1.1	0.78
CDY62594	Canola	cytosol	0.0	0.0
CDX94927	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078EJ83	InterPro:ABCA	EnsemblPlants:CDY02115	ProteinID:CDY02115	ProteinID:CDY02115.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00113507001
PFAM:PF12698	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193	TMHMM:TMhelix	UniParc:UPI0004EDD648	SEG:seg

Description

BnaA03g40520D

Coordinates

chrLK031932:+:220385..222034

Molecular Weight (calculated)

40973.1 Da

IEP (calculated)

9.586

GRAVY (calculated)

0.438

Length

365 amino acids

Sequence
(BLAST)

001: MTLREGMPLL YQQFTALFKK NLLLSWRNKS ATCLHLFSSF FFIFLIFCIQ EAMKASDVSS SADVNITDPK ASASSPIPPC EDKFYVKLPC YDFVWSGNQS
101: RRVSDIVSAI MANNPGRPIP TNKTNSSSAT KRGRTEDPTF KFLVPLQIAA EREIARFLIG DPKFGWSFGF KEFAQPAVAK DITISPLNLM GPVFFLAFSM
201: FGFVLQLGSL ATEKELKLRQ AMTVMGVYDT AYLLSWLIWE GILTFVSSLF LVLFGMMFQF DFFLKNSFFV VFLLFLLFQF NMISLAFMLS SFISKSSSAT
301: TVGFLVFLIS FITQTVATSG FPYSSTHSLS RRVIWSFFPP NTFSAGFQLL IEATSIPGSP GISWI

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.