CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77874	Canola	plasma membrane	93.08	17.85
CDY21797	Canola	plasma membrane	83.65	14.71
CDY23798	Canola	nucleus, peroxisome, plasma membrane	33.96	14.06
CDY02120	Canola	cytosol, nucleus, plasma membrane	50.94	12.29
CDY31786	Canola	cytosol, nucleus, plasma membrane	50.94	12.27
CDY62596	Canola	cytosol, plasma membrane, vacuole	22.64	11.73
CDY24156	Canola	plasma membrane	67.92	11.46
CDY36930	Canola	plasma membrane	67.3	11.36
CDX77421	Canola	plasma membrane	66.67	11.34
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	62.89	11.29
CDX83025	Canola	plasma membrane	66.67	11.25
CDY39546	Canola	plasma membrane	66.04	11.23
CDX68441	Canola	plasma membrane	65.41	11.04
CDY24158	Canola	plasma membrane	63.52	10.91
CDY24157	Canola	plastid	63.52	10.62
CDY02115	Canola	extracellular, mitochondrion, plasma membrane, plastid	23.27	10.14
CDY36931	Canola	plastid	57.86	9.88
CDY62599	Canola	plasma membrane	52.83	9.67
CDX68435	Canola	mitochondrion, plastid	15.72	9.58
CDY02114	Canola	plasma membrane	51.57	9.24
CDY23039	Canola	plasma membrane	51.57	9.23
CDY02119	Canola	endoplasmic reticulum, plasma membrane, plastid	5.66	5.03
CDY23799	Canola	cytosol, peroxisome, plasma membrane	6.29	4.9
CDY52820	Canola	cytosol, nucleus, plasma membrane	25.16	4.56
CDY02116	Canola	plasma membrane	23.27	4.4
CDY23800	Canola	plasma membrane	25.16	4.37
CDY23042	Canola	plasma membrane	25.16	4.27
CDY24159	Canola	golgi, mitochondrion	24.53	4.16
CDY36933	Canola	golgi, mitochondrion	24.53	4.04
CDY02118	Canola	plasma membrane	25.16	4.02
CDX68438	Canola	endoplasmic reticulum, extracellular, plasma membrane	10.69	3.99
CDY64180	Canola	plasma membrane	15.72	3.99
CDY23040	Canola	plasma membrane	23.9	3.98
CDX68439	Canola	nucleus	3.77	3.8
CDX68440	Canola	cytosol, mitochondrion	2.52	2.88
CDX68434	Canola	plasma membrane	7.55	1.69
CDX68436	Canola	plasma membrane	2.52	1.36
CDY01873	Canola	cytosol	1.89	1.14
CDX96058	Canola	cytosol	1.89	1.14
CDX69605	Canola	plastid	1.89	1.09
CDY58413	Canola	cytosol, plastid	1.89	1.09
CDY35403	Canola	mitochondrion, plasma membrane	12.58	1.08
CDY22536	Canola	mitochondrion, plasma membrane	11.95	1.03
HORVU4Hr1G025760.12	Barley	cytosol	0.63	0.58
CDY57805	Canola	plastid	0.63	0.3
CDY16404	Canola	plastid	0.63	0.3
CDY23043	Canola	cytosol, mitochondrion	0.63	0.2
CDY39288	Canola	cytosol	0.0	0.0
CDX94927	Canola	cytosol	0.0	0.0
CDY62594	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078GJ13	UniProt:A0A078GJ13	InterPro:ABCA	EnsemblPlants:CDY24573	ProteinID:CDY24573
ProteinID:CDY24573.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00026906001	PFAM:PF12698	PANTHER:PTHR19229	PANTHER:PTHR19229:SF141	TMHMM:TMhelix	UniParc:UPI0004EECA29

Description

BnaC05g32570DBnaC05g32570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ13]

Coordinates

chrLK032161:+:120308..121064

Molecular Weight (calculated)

18427.3 Da

IEP (calculated)

9.747

GRAVY (calculated)

0.529

Length

159 amino acids

Sequence
(BLAST)

001: MLNFKGWYNS TCKNNKVIRP MVLIRVPRLV NLASNAYLEL LKGSQTNILC EYIKEIPKPE TKLTLDITSL IGPLFFTWVI LLLSPVILTT LVYEKQQRLR
101: IMMKMHGLGD APYWIVSYTY FVLVSILYML CFAIFGSAIG LNFFRLNDCS IQLVFFLQK

Best Arabidopsis Sequence Match ( AT3G47760.1 )
(BLAST)

001: MGNHVPAGFF TQANSLFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCID KNGDGKCGQK SCGLQYSSQN QAFFCAFPNP
101: PPLLPLLHIP RPETRSSDRD RDSCRQTGSC PVTILLTGNN HSLGTNYTNY LDPGILSDLP IFNVQPRCTP DTTTFSFPFR QSPLEFHKEV RCVEGLNLWR
201: NNSIEISNEI FKGYRQGNLE EIINEVAAAY DLMDTDINNF NVTIWYNSTY KGDLRDRRVK YVRVPRSVNL VSNAYLEFLQ GSGTKMLFDF VKEMPKQETR
301: LRLEMASLIG PIFFTWVILL LFPVMLTSLV YEKQQHLRII MKMHGLGDGP YWMITYAYFL AISIVYIICL MIFGSAIGLK FFRFNDYSIQ FIFYFLCINL
401: QISIAFLVSS AFSKIETASV AAYLYVFGSG LLGAFLFQFL LEGLSFPRSW IYIMELYPGF SLYRGLYEFS QYAFKRNLNG SGGMKWKDFN DSAMEEIFYI
501: IIVEWFVALI AAYYTDKISS SGIDPFFFLK NQNPFKKSPS PYGLQRQVSA IAIEMEKLDV AHELMLETST GHAIVCDNLK KVYPCRDGNP QKMAVRGLSL
601: AVPSGECFGM LGPNGAGKTS FINMMTGLMK PTSGAAFVHG LDICKDMDIV YTSIGVCPQH DLLWETLTGR EHLLFYGRLK NLKGSDLDQA VEESLKSVNL
701: FRGGVADKPA GKYSGGMKRR LSVAISLIGS PKVVYMDEPS TGLDPASRRS LWTAIKRAKN HTAIILTTHS MEEAEFLCDR LGIFVDGRLQ CVGNPKELKA
801: RYGGSYVLTM TTPSEHEKDV EMLVQDVSPN AKKIYHIAGT QKFEIPKEEV RISEVFQAVE KAKDNFRVFA WGLADTTLED VFIKVARTAQ ASNVFS

Arabidopsis Description

ABCA5ABC transporter A family member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.