Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003145_P001 | Maize | mitochondrion | 35.86 | 56.35 |
| Zm00001d047131_P001 | Maize | plastid | 37.88 | 51.72 |
| CDY16404 | Canola | plastid | 60.1 | 36.17 |
| CDY57805 | Canola | plastid | 59.6 | 35.87 |
| AT1G65410.1 | Thale cress | plastid | 59.09 | 33.91 |
| GSMUA_Achr1P08960_001 | Banana | cytosol, mitochondrion, plastid | 46.97 | 31.42 |
| KRH40333 | Soybean | plastid | 52.02 | 29.86 |
| VIT_04s0023g00290.t01 | Wine grape | plastid | 51.01 | 29.62 |
| Solyc04g056650.2.1 | Tomato | plastid | 50.51 | 28.57 |
| TraesCS5B01G369900.1 | Wheat | plastid | 51.01 | 28.29 |
| EER96343 | Sorghum | plastid | 48.48 | 27.2 |
| Os03t0670100-01 | Rice | plastid | 46.97 | 26.35 |
| TraesCS5A01G367900.1 | Wheat | golgi | 50.51 | 26.25 |
| KRH00900 | Soybean | plastid | 52.02 | 26.08 |
| HORVU5Hr1G091750.1 | Barley | plastid | 50.51 | 25.84 |
| Zm00001d019644_P003 | Maize | plastid | 48.48 | 25.33 |
| TraesCS5D01G377300.1 | Wheat | cytosol, peroxisome, plastid | 50.51 | 25.32 |
| CDX96058 | Canola | cytosol | 18.69 | 14.02 |
| CDY01873 | Canola | cytosol | 18.18 | 13.64 |
| CDX68439 | Canola | nucleus | 9.09 | 11.39 |
| CDX69605 | Canola | plastid | 15.15 | 10.95 |
| CDY58413 | Canola | cytosol, plastid | 15.15 | 10.95 |
| CDX68438 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 14.14 | 6.57 |
| CDY23043 | Canola | cytosol, mitochondrion | 15.66 | 6.05 |
| CDX68436 | Canola | plasma membrane | 7.58 | 5.1 |
| CDY02120 | Canola | cytosol, nucleus, plasma membrane | 14.65 | 4.4 |
| CDY31786 | Canola | cytosol, nucleus, plasma membrane | 14.65 | 4.39 |
| CDY23798 | Canola | nucleus, peroxisome, plasma membrane | 8.08 | 4.17 |
| CDY62594 | Canola | cytosol | 9.09 | 3.94 |
| CDX77874 | Canola | plasma membrane | 15.66 | 3.74 |
| CDY36932 | Canola | endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid | 16.67 | 3.72 |
| CDX83025 | Canola | plasma membrane | 17.17 | 3.61 |
| CDY02114 | Canola | plasma membrane | 16.16 | 3.61 |
| CDY23039 | Canola | plasma membrane | 16.16 | 3.6 |
| CDY24158 | Canola | plasma membrane | 16.67 | 3.56 |
| CDX68434 | Canola | plasma membrane | 12.63 | 3.52 |
| CDY64180 | Canola | plasma membrane | 11.11 | 3.51 |
| CDX68441 | Canola | plasma membrane | 16.67 | 3.5 |
| CDY02116 | Canola | plasma membrane | 14.65 | 3.45 |
| CDY62599 | Canola | plasma membrane | 15.15 | 3.45 |
| CDY21797 | Canola | plasma membrane | 15.66 | 3.43 |
| CDY36930 | Canola | plasma membrane | 16.16 | 3.4 |
| CDY24156 | Canola | plasma membrane | 16.16 | 3.4 |
| CDX77421 | Canola | plasma membrane | 15.66 | 3.32 |
| CDY24159 | Canola | golgi, mitochondrion | 15.66 | 3.31 |
| CDY36931 | Canola | plastid | 15.15 | 3.22 |
| CDY36933 | Canola | golgi, mitochondrion | 15.66 | 3.21 |
| CDY39546 | Canola | plasma membrane | 15.15 | 3.21 |
| CDY24157 | Canola | plastid | 15.15 | 3.15 |
| CDY23040 | Canola | plasma membrane | 14.65 | 3.04 |
| CDY23800 | Canola | plasma membrane | 13.64 | 2.95 |
| CDY23042 | Canola | plasma membrane | 13.64 | 2.88 |
| CDY52820 | Canola | cytosol, nucleus, plasma membrane | 12.63 | 2.85 |
| CDY02118 | Canola | plasma membrane | 13.64 | 2.71 |
| CDY22536 | Canola | mitochondrion, plasma membrane | 15.15 | 1.62 |
| CDY35403 | Canola | mitochondrion, plasma membrane | 15.15 | 1.61 |
| CDY02115 | Canola | extracellular, mitochondrion, plasma membrane, plastid | 1.52 | 0.82 |
| CDX68440 | Canola | cytosol, mitochondrion | 0.51 | 0.72 |
| CDY24573 | Canola | plasma membrane | 0.0 | 0.0 |
| CDX68435 | Canola | mitochondrion, plastid | 0.0 | 0.0 |
| CDX94927 | Canola | cytosol | 0.0 | 0.0 |
| CDY02119 | Canola | endoplasmic reticulum, plasma membrane, plastid | 0.0 | 0.0 |
| CDY23799 | Canola | cytosol, peroxisome, plasma membrane | 0.0 | 0.0 |
| CDY62596 | Canola | cytosol, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY39288 | EnsemblPlantsGene:GSBRNA2T00067526001 | Gene3D:3.40.50.300 | GO:A0A078HRA2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | GO:GO:0016887 | InterPro:ABC_transporter-like |
| InterPro:IPR003439 | InterPro:P-loop_NTPase | PANTHER:PTHR43023 | PANTHER:PTHR43023:SF3 | PFAM:PF00005 | ProteinID:CDY39288 |
| ProteinID:CDY39288.1 | SUPFAM:SSF52540 | UniParc:UPI0004EEB3EE | UniProt:A0A078HRA2 | MapMan:5.8.2.2.3 | : |
Description
BnaC06g27030DBnaC06g27030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRA2]
Coordinates
chrLK032444:-:250616..251827
Molecular Weight (calculated)
22187.0 Da
IEP (calculated)
8.454
GRAVY (calculated)
0.060
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKDAKIQNL SKSGEGGLLR EPENDSDILI KCRDAYKSFG DKHILKGVVT IKIVYIVESL YINCYLFSAE EFHMRLIFIF CLTNYFCTHI RHGEAVGVIG
101: PFGTGKSTIL KIMAGLLASD KGEVYIRGKK RAGLISDEEI SGFVCVSNGF LVFQSAALFY SLTVRENVGF LHYESSKMSE NQISELVTQT LQYTRKAL
101: PFGTGKSTIL KIMAGLLASD KGEVYIRGKK RAGLISDEEI SGFVCVSNGF LVFQSAALFY SLTVRENVGF LHYESSKMSE NQISELVTQT LQYTRKAL
001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY
Arabidopsis Description
TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.