Factsheet for VIT_04s0023g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40333	Soybean	plastid	76.83	75.94
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	65.69	75.68
Bra022481.1-P	Field mustard	plastid	71.85	74.47
CDY16404	Canola	plastid	71.85	74.47
CDY57805	Canola	plastid	71.85	74.47
AT1G65410.1	Thale cress	plastid	73.61	72.75
Solyc04g056650.2.1	Tomato	plastid	74.49	72.57
Zm00001d003145_P001	Maize	mitochondrion	26.39	71.43
EER96343	Sorghum	plastid	70.09	67.71
Os03t0670100-01	Rice	plastid	68.92	66.57
TraesCS5B01G369900.1	Wheat	plastid	69.21	66.11
Zm00001d047131_P001	Maize	plastid	27.86	65.52
KRH00900	Soybean	plastid	74.49	64.3
Zm00001d019644_P003	Maize	plastid	70.38	63.32
TraesCS5A01G367900.1	Wheat	golgi	68.62	61.42
HORVU5Hr1G091750.1	Barley	plastid	68.04	59.95
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	68.92	59.49
CDY39288	Canola	cytosol	29.62	51.01
VIT_11s0052g00540.t01	Wine grape	cytosol	21.99	27.99
VIT_14s0068g01730.t01	Wine grape	plastid	18.77	22.54
VIT_12s0055g00730.t01	Wine grape	extracellular	6.45	17.32
VIT_18s0041g02240.t01	Wine grape	plasma membrane	19.94	9.24
VIT_17s0000g05860.t01	Wine grape	plasma membrane, plastid	22.29	8.01
VIT_17s0000g05850.t01	Wine grape	plasma membrane	21.41	7.62
VIT_08s0007g08730.t01	Wine grape	mitochondrion, plasma membrane	17.89	3.24
VIT_07s0095g00600.t01	Wine grape	extracellular	0.59	2.9

Protein Annotations

EntrezGene:100246248	wikigene:100246248	Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ProteinID:CCB44515	ProteinID:CCB44515.1	UniProt:F6GX29	EMBL:FN594959	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	EntrezGene:LOC100246248	wikigene:LOC100246248
InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC64579	UniParc:UPI000198310B	ArrayExpress:VIT_04s0023g00290	EnsemblPlantsGene:VIT_04s0023g00290
EnsemblPlants:VIT_04s0023g00290.t01	unigene:Vvi.12863	RefSeq:XP_002272680	RefSeq:XP_002272680.1	:	:

Description

No Description!

Coordinates

chr4:+:16404546..16417804

Molecular Weight (calculated)

37326.8 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.159

Length

341 amino acids

Sequence
(BLAST)

001: MVSLPGVLPI CHWSNRFAAP GNAKALNWRS HGQKRNIVCA CMAPPRNLRT DGFAATKFND SSHLKNPSVD GDREDDSDVL VECRDVYKSF GEKHILRGVS
101: FKIRHGEAVG IIGPSGTGKS TVLKIIAGLL APDKGEVLIR GRRRHGLISD QEISGLRIGL VFQSAALFDS LTVRENVGFL LYENSSMPED QIHELVTESL
201: AAVGLKGVEE RLPSELSGGM KKRVALARSI IFDTTKDAIE PEVLLYDEPT AGLDPIASTV VEDLIRSVHL KEEDAPGKLG KIASYVVVTH QHSTIRRAVD
301: RLLFLYDGKI VWEGMTDEFT TSTNPIVQQF ASGSLDGPIR Y

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.