Factsheet for TraesCS5A01G367900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G369900.1	Wheat	plastid	87.93	93.84
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	90.81	87.59
HORVU5Hr1G091750.1	Barley	plastid	87.66	86.3
Os03t0670100-01	Rice	plastid	73.49	79.32
EER96343	Sorghum	plastid	72.44	78.19
GSMUA_Achr1P08960_001	Banana	cytosol, mitochondrion, plastid	59.84	77.03
Zm00001d003145_P001	Maize	mitochondrion	24.93	75.4
CDY16404	Canola	plastid	62.73	72.64
Zm00001d019644_P003	Maize	plastid	72.18	72.56
Bra022481.1-P	Field mustard	plastid	62.47	72.34
CDY57805	Canola	plastid	62.47	72.34
Zm00001d047131_P001	Maize	plastid	26.51	69.66
AT1G65410.1	Thale cress	plastid	62.73	69.28
VIT_04s0023g00290.t01	Wine grape	plastid	61.42	68.62
KRH40333	Soybean	plastid	61.68	68.12
Solyc04g056650.2.1	Tomato	plastid	60.37	65.71
KRH00900	Soybean	plastid	60.1	57.97
CDY39288	Canola	cytosol	26.25	50.51
TraesCS7A01G427700.1	Wheat	cytosol	19.42	28.46
TraesCS4A01G414400.1	Wheat	cytosol	18.37	26.62
TraesCS3A01G399500.1	Wheat	plastid	17.32	24.72
TraesCS3A01G399400.1	Wheat	cytosol	11.55	17.39
TraesCS7A01G367700.1	Wheat	plasma membrane	17.59	11.8
TraesCS6A01G183200.1	Wheat	plasma membrane	19.68	8.06
TraesCS1A01G343200.1	Wheat	mitochondrion	19.68	7.97
TraesCS5A01G193200.1	Wheat	plasma membrane	18.11	7.29
TraesCS1A01G343000.1	Wheat	plasma membrane	18.11	7.24
TraesCS1A01G342900.2	Wheat	plasma membrane	18.11	7.14
TraesCS5A01G534100.3	Wheat	cytosol	17.59	6.63

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43023	PANTHER:PTHR43023:SF3	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5A01G367900	EnsemblPlants:TraesCS5A01G367900.1	TIGR:cd03261	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:+:568159648..568164880

Molecular Weight (calculated)

41057.8 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.081

Length

381 amino acids

Sequence
(BLAST)

001: MWALVASHPQ ASRRIPPTFL FILHSPPSAT MASPPTAAAA LRRPGAHVGR VPVPRHSGAP CLRAALPFRL GVLSSRKCRA VVSATRRPGL GNAGNLREGS
101: NVAKNWDLGR QIGDEHGVLI ECRDVHKSFG DKHVLQGVSF KIRHGEAVGI IGPSGTGKST ILKVMAGLLA PDKGEVFICG KKRQGLVSDE DISGLRIGLV
201: FQSAALFDSL NVRENVGFLL YENSKLSEER IGALVTETLA AVGLKGVEER MPSELSGGMK KRVALARSII NDDTKETIEP EVLLYDEPTA GLDPIASTVV
301: EDLIRSMHVT GKDAMGKPGK IASYAVVTHQ HSTIRRAVDR LLFLHEGKIV WEGMTEEFMT STNPIVQQFA SGSLDGPIRY F

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.