Factsheet for TraesCS1A01G342900.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 1
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G356100.2	Wheat	plasma membrane	98.03	98.24
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	98.03	98.13
HORVU1Hr1G075640.9	Barley	golgi	95.24	93.97
Os08t0398000-01	Rice	plasma membrane	90.37	90.19
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	86.54	86.99
Zm00001d032279_P005	Maize	golgi, plastid	86.96	86.6
GSMUA_Achr7P23880_001	Banana	plasma membrane	74.74	75.37
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	12.63	71.76
GSMUA_Achr3P20560_001	Banana	plastid	20.5	68.99
VIT_17s0000g05850.t01	Wine grape	plasma membrane	67.81	68.37
PGSC0003DMT400046727	Potato	plasma membrane	65.73	67.99
CDY24159	Canola	golgi, mitochondrion	64.08	66.06
KRH54517	Soybean	plasma membrane	65.22	65.15
CDY36933	Canola	golgi, mitochondrion	65.01	65.08
Bra018116.1-P	Field mustard	golgi, mitochondrion	66.36	65.01
CDY64180	Canola	plasma membrane	42.03	64.75
AT5G61690.2	Thale cress	plasma membrane	63.46	64.32
AT5G61730.2	Thale cress	plasma membrane, plastid	63.25	64.32
CDY02116	Canola	plasma membrane	55.59	63.93
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	64.91	63.78
CDY62594	Canola	cytosol	30.12	63.68
CDY23042	Canola	plasma membrane	61.7	63.61
CDY23040	Canola	plasma membrane	62.73	63.52
Bra012928.1-P	Field mustard	plasma membrane	60.77	63.32
KRH63387	Soybean	plasma membrane, plastid	62.42	62.68
CDY23800	Canola	plasma membrane	59.32	62.62
CDY52820	Canola	cytosol, nucleus, plasma membrane	56.11	61.73
CDX68435	Canola	mitochondrion, plastid	16.56	61.3
CDY02118	Canola	plasma membrane	61.59	59.8
CDY62596	Canola	cytosol, plasma membrane, vacuole	18.84	59.28
Bra012930.1-P	Field mustard	plasma membrane	54.66	58.15
CDX68434	Canola	plasma membrane	42.24	57.46
Solyc06g070960.1.1	Tomato	plasma membrane	53.83	56.16
TraesCS7A01G367700.1	Wheat	plasma membrane	17.18	29.23
TraesCS5A01G193200.1	Wheat	plasma membrane	24.43	24.95
TraesCS1A01G343000.1	Wheat	plasma membrane	24.02	24.34
TraesCS6A01G183200.1	Wheat	plasma membrane	23.19	24.06
TraesCS3A01G399500.1	Wheat	plastid	6.63	23.97
TraesCS1A01G343200.1	Wheat	mitochondrion	22.36	22.95
TraesCS5A01G534100.3	Wheat	cytosol	23.5	22.48
TraesCS4A01G414400.1	Wheat	cytosol	5.8	21.29
TraesCS7A01G427700.1	Wheat	cytosol	5.69	21.15
TraesCS5A01G367900.1	Wheat	golgi	7.14	18.11
TraesCS3A01G399400.1	Wheat	cytosol	4.35	16.6

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	MapMan:5.8.5	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF12698	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G342900	EnsemblPlants:TraesCS1A01G342900.2	TIGR:cd03263
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:531682656..531688347

Molecular Weight (calculated)

106920.0 Da

IEP (calculated)

7.238

GRAVY (calculated)

0.015

Length

966 amino acids

Sequence
(BLAST)

001: MELLSGPALA WQQYRSLLRK NAALAWRHRR SSALQLLSSL LFIFLIFCID RAVRSRFSYT TAYQNVRDPK ALVAPPIPPC EDKFFVKTPC YDFLWSGGGS
101: ARVSALVDAI RRNNPGRTIP AEKVLGFSTP DEVDAWLFAN PMRCPGALHF QDINATQMSY GIQTNSTPVA RRGTYEDPTF KFQIPLQVAA EREMARLILG
201: DPNFSWTVGF KEFAHPATET FSTIAQAGPT FFLAIAMFGF VFQISALVTE KELKLRQAMS IMGLYESAYW LSWLTWEALL TLLSALFTVL FGMMFQFDFF
301: LNNSFGILFI LFFLFQLNML GFAFMISTFV AKAASATTVG FAIFIIGFLT QLVTTFGFPY SNNYEAYYQT IWSFFPPNVF AQALNILGKA TATPEDKGIS
401: WNQRKTCQSF ETDCVITVDD IYIWLISTFF LWFILAIYFD NIIPNVNGVR KSVFYFLTPS YWTGKGGKMR SQKGGLCSCF GSNRPADDAS PTDEDVLTEE
501: NLVKEQAAGN EVDPGVAVQI RGLRKTYPGS FNMGCCKCKT TKPFHSVKGL WVNLEKDQLF CLLGPNGAGK TTTISCLTGI TPITGGDALI YGHSVRSSAG
601: MSNIRRMIGV CPQFDILWDA LTAKEHMELF ASIKGLPSST IKSVAEQSLA QVKLSQAANV RAGSYSGGMK RRLSVAIALI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIEEA KKGRAIVLTT HSMEEADILS DRIAIMAKGR LRCIGTSIRL KSKFGTGYIA NVNFSGNGHT QSPNINGDAE AAVNPNIESV KSFFKERLDV
801: DSKEESRTFL TFVIPHEKEP LLTRFFGELQ DREREFGISD IQLGLTTLEE VFLNIAKQAE LESSTAEGTL VTLNLSSGAS IQIPKGARFV GIPGTETEEH
901: PRGVMVEVFW DQDDSGTLCV SGHSDETPVP ANVELTRPPS LSRRGSVGRG GPVGYVIDEN QVPTAR

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.