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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane
Any Predictor:golgi, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:golgi
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24159 Canola golgi, mitochondrion 85.96 90.18
Bra018116.1-P Field mustard golgi, mitochondrion 89.83 89.55
CDY36933 Canola golgi, mitochondrion 87.89 89.53
CDX68435 Canola mitochondrion, plastid 22.08 83.14
CDX68434 Canola plasma membrane 57.68 79.86
AT5G61730.2 Thale cress plasma membrane, plastid 73.96 76.53
AT5G61690.2 Thale cress plasma membrane 74.06 76.39
VIT_17s0000g05850.t01 Wine grape plasma membrane 70.3 72.13
PGSC0003DMT400046727 Potato plasma membrane 67.24 70.77
KRH54517 Soybean plasma membrane 67.14 68.25
GSMUA_Achr3P20540_001 Banana cytosol, extracellular, nucleus 11.7 67.65
GSMUA_Achr7P23880_001 Banana plasma membrane 65.21 66.91
KRH63387 Soybean plasma membrane, plastid 64.9 66.32
EES14950 Sorghum mitochondrion, plasma membrane, plastid 63.89 65.35
TraesCS1B01G356100.2 Wheat plasma membrane 63.89 65.15
TraesCS1A01G342900.2 Wheat plasma membrane 63.78 64.91
TraesCS1D01G345100.2 Wheat mitochondrion, plasma membrane, plastid 63.48 64.66
Os08t0398000-01 Rice plasma membrane 63.48 64.46
Zm00001d032279_P005 Maize golgi, plastid 62.97 63.81
HORVU1Hr1G075640.9 Barley golgi 62.77 63.02
GSMUA_Achr3P20560_001 Banana plastid 17.6 60.28
Solyc06g070960.1.1 Tomato plasma membrane 54.93 58.32
AT3G47790.1 Thale cress plasma membrane 24.42 26.64
AT5G61700.1 Thale cress plasma membrane 23.8 25.52
AT3G47780.1 Thale cress plasma membrane 24.21 25.45
AT5G61740.1 Thale cress plasma membrane 23.5 25.41
AT3G47750.1 Thale cress mitochondrion, plasma membrane 23.8 24.97
AT3G47770.2 Thale cress endoplasmic reticulum, golgi, plasma membrane, plastid 23.09 24.51
AT3G47740.1 Thale cress plasma membrane 23.19 24.46
AT3G47760.3 Thale cress plasma membrane 22.79 23.93
AT5G14100.1 Thale cress plastid 6.31 22.3
AT1G65410.1 Thale cress plastid 7.53 21.45
AT1G67940.1 Thale cress cytosol 5.6 20.91
AT2G41700.1 Thale cress mitochondrion, plasma membrane 27.16 14.19
Protein Annotations
MapMan:24.1.3.2.1Gene3D:3.40.50.300MapMan:5.8.5EntrezGene:823927UniProt:A0A178V6R6InterPro:AAA+_ATPase
InterPro:ABCAInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSProteinID:AEE78323.1ArrayExpress:AT3G47730EnsemblPlantsGene:AT3G47730
RefSeq:AT3G47730TAIR:AT3G47730RefSeq:AT3G47730-TAIR-GEnsemblPlants:AT3G47730.1TAIR:AT3G47730.1Symbol:ATATH1
Unigene:At.23005EMBL:BT004197EMBL:BT005456ProteinID:CAB41856.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0043231GO:GO:0055085InterPro:IPR003439
RefSeq:NP_190357.2ProteinID:OAP01950.1InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF12698PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00211PFscan:PS50893PANTHER:PTHR19229
PANTHER:PTHR19229:SF193UniProt:Q84K47SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI000000C2D8
SEG:seg:::::
Description
ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
Coordinates
chr3:-:17594060..17599083
Molecular Weight (calculated)
108694.0 Da
IEP (calculated)
7.924
GRAVY (calculated)
0.083
Length
983 amino acids
Sequence
(BLAST)
001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.