Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019513.1-P | Field mustard | plasma membrane | 85.9 | 86.67 |
| CDX77874 | Canola | plasma membrane | 79.02 | 85.89 |
| CDY21797 | Canola | plasma membrane | 86.13 | 85.84 |
| KRH54520 | Soybean | plasma membrane, plastid | 60.71 | 67.78 |
| KRG88422 | Soybean | cytosol, mitochondrion, peroxisome, plasma membrane | 36.18 | 66.4 |
| AT3G47780.1 | Thale cress | plasma membrane | 67.37 | 64.92 |
| AT3G47740.1 | Thale cress | plasma membrane | 65.93 | 63.73 |
| Solyc03g113040.2.1 | Tomato | plastid | 66.81 | 63.7 |
| AT3G47760.3 | Thale cress | plasma membrane | 66.04 | 63.57 |
| KRH63384 | Soybean | plasma membrane | 50.72 | 62.77 |
| AT3G47770.2 | Thale cress | endoplasmic reticulum, golgi, plasma membrane, plastid | 64.37 | 62.63 |
| AT3G47750.1 | Thale cress | mitochondrion, plasma membrane | 64.82 | 62.33 |
| Solyc06g070920.2.1 | Tomato | extracellular, plasma membrane | 43.95 | 62.07 |
| Solyc03g113060.2.1 | Tomato | extracellular | 64.93 | 61.97 |
| AT5G61700.1 | Thale cress | plasma membrane | 61.93 | 60.85 |
| AT5G61740.1 | Thale cress | plasma membrane | 61.04 | 60.51 |
| KRH56933 | Soybean | plasma membrane, plastid | 63.48 | 60.27 |
| TraesCS7A01G367700.1 | Wheat | plasma membrane | 37.96 | 60.21 |
| KRH03450 | Soybean | plasma membrane, plastid | 63.15 | 59.64 |
| KXG25097 | Sorghum | plasma membrane | 60.49 | 56.89 |
| TraesCS1A01G343000.1 | Wheat | plasma membrane | 59.71 | 56.45 |
| TraesCS1D01G345200.1 | Wheat | plasma membrane | 59.6 | 56.41 |
| HORVU1Hr1G075620.5 | Barley | plasma membrane | 59.38 | 56.08 |
| Os08t0398300-01 | Rice | plasma membrane | 59.27 | 55.8 |
| TraesCS1B01G356200.1 | Wheat | plasma membrane | 58.93 | 55.78 |
| HORVU4Hr1G087670.8 | Barley | mitochondrion | 58.82 | 55.21 |
| Zm00001d050259_P002 | Maize | plasma membrane | 60.04 | 54.98 |
| OQU89360 | Sorghum | plasma membrane | 57.6 | 54.75 |
| TraesCS4B01G365000.1 | Wheat | plasma membrane | 59.49 | 54.47 |
| TraesCS5D01G195700.1 | Wheat | plasma membrane | 57.05 | 54.33 |
| TraesCS5A01G193200.1 | Wheat | plasma membrane | 57.05 | 54.33 |
| Zm00001d020208_P003 | Maize | plasma membrane | 56.94 | 54.11 |
| TraesCSU01G138200.1 | Wheat | plasma membrane | 59.38 | 53.61 |
| Solyc06g070950.1.1 | Tomato | plasma membrane | 52.94 | 53.54 |
| TraesCS7D01G355100.1 | Wheat | plastid | 56.49 | 53.3 |
| TraesCS5A01G534100.3 | Wheat | cytosol | 59.49 | 53.07 |
| TraesCS7B01G260800.1 | Wheat | plastid | 56.27 | 53.03 |
| Os06t0589300-01 | Rice | plasma membrane | 55.6 | 52.79 |
| TraesCS5B01G188600.1 | Wheat | plasma membrane | 55.38 | 52.53 |
| HORVU5Hr1G056930.20 | Barley | plasma membrane | 56.94 | 52.51 |
| TraesCS3D01G368700.2 | Wheat | plasma membrane | 56.38 | 52.48 |
| EER89983 | Sorghum | plastid | 55.27 | 52.2 |
| Zm00001d036927_P001 | Maize | plasma membrane, plastid | 55.38 | 51.71 |
| HORVU7Hr1G085680.2 | Barley | endoplasmic reticulum, peroxisome, plastid | 56.16 | 51.06 |
| GSMUA_Achr7P23890_001 | Banana | plasma membrane | 61.6 | 47.44 |
| GSMUA_Achr3P20510_001 | Banana | plasma membrane | 60.04 | 46.12 |
| HORVU3Hr1G030470.1 | Barley | cytosol, extracellular, plasma membrane | 7.21 | 38.69 |
| HORVU6Hr1G043820.1 | Barley | cytosol, endoplasmic reticulum, plasma membrane | 7.21 | 38.69 |
| Solyc06g070930.2.1 | Tomato | plastid | 11.54 | 37.96 |
| HORVU4Hr1G039510.1 | Barley | cytosol | 6.88 | 36.9 |
| AT5G61730.2 | Thale cress | plasma membrane, plastid | 26.42 | 25.05 |
| AT5G61690.2 | Thale cress | plasma membrane | 26.42 | 24.97 |
| AT3G47730.1 | Thale cress | mitochondrion, plasma membrane | 26.64 | 24.42 |
| AT5G14100.1 | Thale cress | plastid | 6.99 | 22.66 |
| AT1G67940.1 | Thale cress | cytosol | 6.55 | 22.43 |
| AT1G65410.1 | Thale cress | plastid | 8.44 | 22.03 |
| AT2G41700.1 | Thale cress | mitochondrion, plasma membrane | 21.64 | 10.36 |
Protein Annotations
| MapMan:24.1.3.2.1 | Gene3D:3.40.50.300 | EntrezGene:823933 | InterPro:AAA+_ATPase | InterPro:ABCA | InterPro:ABC_transporter-like |
| InterPro:ABC_transporter_CS | ProteinID:AEE78329.1 | ArrayExpress:AT3G47790 | EnsemblPlantsGene:AT3G47790 | RefSeq:AT3G47790 | TAIR:AT3G47790 |
| RefSeq:AT3G47790-TAIR-G | EnsemblPlants:AT3G47790.1 | TAIR:AT3G47790.1 | Symbol:ATATH7 | EMBL:AY099665 | Unigene:At.35771 |
| ProteinID:CAB41862.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
| GO:GO:0043231 | GO:GO:0055085 | InterPro:IPR003439 | RefSeq:NP_190363.3 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFAM:PF12698 | ScanProsite:PS00211 | PFscan:PS50893 | PANTHER:PTHR19229 | PANTHER:PTHR19229:SF141 | UniProt:Q8LPK0 |
| SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI00000A5DA9 | SEG:seg | : |
Description
ABCA8ABC transporter A family member 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK0]
Coordinates
chr3:+:17629530..17633911
Molecular Weight (calculated)
101342.0 Da
IEP (calculated)
8.576
GRAVY (calculated)
0.036
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSSPASFL TQADALLRKN LVFQKRNIWS NIRLITIPFF LCLLLLVIQM LFDTQFNDVH GQCGCNEKTC GLRYSTSEQA AFCAIPNPPQ WTPLLQIPAP
101: EYRAAIPYPS HTSPATFLFT GNNQSLGNIL MGNMYSNSSG FDGDLAYYVL GSSSFPAYTN HMDSAFISDL PIYNIQHECS PNSSFSILIH QSPLAFPKEV
201: NCVQGLNLWR NSSSDVNNEL FKGYRKGNPD KKINEFAGAF DFQNTNGNNL NVSVWYNSTY KNDTVVRPMA LIRVPRLVNL ASNAYLEFLK GSETKILFEY
301: VKEMPKPETK LSLDIASLIG PLFFTWVILL LFPVILTTLV YEKQQRLRIM MKMHGLGDVP YWIVSYTYFL LISILYMLCF AIFGSLIGLN FFRLNDYSIQ
401: LVFFFICINL QISVAFLASA MFSDVKTATV IAYIYVFGTG LLGIFLFQFF LEDPLFPRGW IIAMELYPGF SLYRGLYELS QSAFAGDYRG IDGMKWRDFG
501: NGMKEVTCIM LIEWLLLLGL AYYIDQIIYS RKHPLFFLLQ STSKKKQHFS DNKISKVVVE MEKPDVCRER EKVEQCLLKS TRDSAVLCNN LKKVYSGKDG
601: NPQKLAVRGL SLALPQGECF GMLGPNGAGK TSFINMMTGI IKPSSGTAFV QGLDILTDMD RIYTTIGVCP QHDLLWEKLS GREHLLFYGR LKNLKGSVLT
701: QAVEESLRSV NLFHGGIGDK QVSKYSGGMK RRLSVAISLI GSPKVVYMDE PSTGLDPASR KSLWDVVKRA KRKGAIILTT HSMEEAEILC DRIGIFVDGS
801: LQCIGNPKEL KSRYGGSYVL TVTTSEEHEK EVEQLVHNIS TNAKKIYRTA GTQKFELPKQ EVKIGEVFKA LEKAKTMFPV VAWGLADTTL EDVFIKVAQT
901: S
101: EYRAAIPYPS HTSPATFLFT GNNQSLGNIL MGNMYSNSSG FDGDLAYYVL GSSSFPAYTN HMDSAFISDL PIYNIQHECS PNSSFSILIH QSPLAFPKEV
201: NCVQGLNLWR NSSSDVNNEL FKGYRKGNPD KKINEFAGAF DFQNTNGNNL NVSVWYNSTY KNDTVVRPMA LIRVPRLVNL ASNAYLEFLK GSETKILFEY
301: VKEMPKPETK LSLDIASLIG PLFFTWVILL LFPVILTTLV YEKQQRLRIM MKMHGLGDVP YWIVSYTYFL LISILYMLCF AIFGSLIGLN FFRLNDYSIQ
401: LVFFFICINL QISVAFLASA MFSDVKTATV IAYIYVFGTG LLGIFLFQFF LEDPLFPRGW IIAMELYPGF SLYRGLYELS QSAFAGDYRG IDGMKWRDFG
501: NGMKEVTCIM LIEWLLLLGL AYYIDQIIYS RKHPLFFLLQ STSKKKQHFS DNKISKVVVE MEKPDVCRER EKVEQCLLKS TRDSAVLCNN LKKVYSGKDG
601: NPQKLAVRGL SLALPQGECF GMLGPNGAGK TSFINMMTGI IKPSSGTAFV QGLDILTDMD RIYTTIGVCP QHDLLWEKLS GREHLLFYGR LKNLKGSVLT
701: QAVEESLRSV NLFHGGIGDK QVSKYSGGMK RRLSVAISLI GSPKVVYMDE PSTGLDPASR KSLWDVVKRA KRKGAIILTT HSMEEAEILC DRIGIFVDGS
801: LQCIGNPKEL KSRYGGSYVL TVTTSEEHEK EVEQLVHNIS TNAKKIYRTA GTQKFELPKQ EVKIGEVFKA LEKAKTMFPV VAWGLADTTL EDVFIKVAQT
901: S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.