Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G47750.1 | Thale cress | mitochondrion, plasma membrane | 81.53 | 80.58 |
| AT3G47760.3 | Thale cress | plasma membrane | 80.89 | 80.02 |
| AT3G47740.1 | Thale cress | plasma membrane | 75.16 | 74.68 |
| CDX77421 | Canola | plasma membrane | 74.08 | 73.37 |
| AT3G47780.1 | Thale cress | plasma membrane | 73.97 | 73.26 |
| Bra015049.1-P | Field mustard | plasma membrane | 70.52 | 73.12 |
| CDY39546 | Canola | plasma membrane | 73.76 | 73.05 |
| AT5G61700.1 | Thale cress | plasma membrane | 65.33 | 65.98 |
| KRH54520 | Soybean | plasma membrane, plastid | 57.02 | 65.43 |
| AT5G61740.1 | Thale cress | plasma membrane | 64.15 | 65.35 |
| AT3G47790.1 | Thale cress | plasma membrane | 62.63 | 64.37 |
| Solyc03g113040.2.1 | Tomato | plastid | 62.53 | 61.27 |
| KRG88422 | Soybean | cytosol, mitochondrion, peroxisome, plasma membrane | 32.29 | 60.9 |
| Bra033786.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.55 | 60.74 |
| Solyc06g070920.2.1 | Tomato | extracellular, plasma membrane | 41.79 | 60.66 |
| KRH63384 | Soybean | plasma membrane | 47.41 | 60.3 |
| Solyc03g113060.2.1 | Tomato | extracellular | 60.91 | 59.75 |
| TraesCS7A01G367700.1 | Wheat | plasma membrane | 36.61 | 59.68 |
| KRH56933 | Soybean | plasma membrane, plastid | 59.61 | 58.17 |
| KRH03450 | Soybean | plasma membrane, plastid | 59.72 | 57.97 |
| CDX68438 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 26.24 | 57.04 |
| VIT_07s0095g00600.t01 | Wine grape | extracellular | 4.1 | 55.07 |
| KXG25097 | Sorghum | plasma membrane | 55.72 | 53.86 |
| HORVU4Hr1G087670.8 | Barley | mitochondrion | 55.51 | 53.54 |
| Os08t0398300-01 | Rice | plasma membrane | 55.18 | 53.4 |
| TraesCS1D01G345200.1 | Wheat | plasma membrane | 54.86 | 53.36 |
| TraesCS1A01G343000.1 | Wheat | plasma membrane | 54.75 | 53.2 |
| HORVU1Hr1G075620.5 | Barley | plasma membrane | 54.64 | 53.04 |
| TraesCS1B01G356200.1 | Wheat | plasma membrane | 54.43 | 52.94 |
| TraesCS4B01G365000.1 | Wheat | plasma membrane | 55.72 | 52.44 |
| TraesCS7B01G260800.1 | Wheat | plastid | 53.78 | 52.09 |
| TraesCS7D01G355100.1 | Wheat | plastid | 53.67 | 52.04 |
| Solyc06g070950.1.1 | Tomato | plasma membrane | 50.0 | 51.96 |
| Zm00001d050259_P002 | Maize | plasma membrane | 55.18 | 51.93 |
| TraesCS5D01G195700.1 | Wheat | plasma membrane | 53.02 | 51.9 |
| TraesCS5A01G193200.1 | Wheat | plasma membrane | 53.02 | 51.9 |
| Os06t0589300-01 | Rice | plasma membrane | 53.13 | 51.84 |
| TraesCSU01G138200.1 | Wheat | plasma membrane | 55.29 | 51.3 |
| OQU89360 | Sorghum | plasma membrane | 52.16 | 50.95 |
| EER89983 | Sorghum | plastid | 52.48 | 50.94 |
| Zm00001d020208_P003 | Maize | plasma membrane | 52.05 | 50.84 |
| TraesCS5A01G534100.3 | Wheat | cytosol | 55.29 | 50.69 |
| TraesCS5B01G188600.1 | Wheat | plasma membrane | 51.73 | 50.42 |
| Zm00001d036927_P001 | Maize | plasma membrane, plastid | 52.48 | 50.36 |
| HORVU5Hr1G056930.20 | Barley | plasma membrane | 53.13 | 50.36 |
| TraesCS3D01G368700.2 | Wheat | plasma membrane | 52.27 | 50.0 |
| HORVU7Hr1G085680.2 | Barley | endoplasmic reticulum, peroxisome, plastid | 53.35 | 49.85 |
| GSMUA_Achr7P23890_001 | Banana | plasma membrane | 58.64 | 46.41 |
| GSMUA_Achr3P20510_001 | Banana | plasma membrane | 55.83 | 44.08 |
| HORVU3Hr1G030470.1 | Barley | cytosol, extracellular, plasma membrane | 7.67 | 42.26 |
| HORVU6Hr1G043820.1 | Barley | cytosol, endoplasmic reticulum, plasma membrane | 7.56 | 41.67 |
| HORVU4Hr1G039510.1 | Barley | cytosol | 7.34 | 40.48 |
| Solyc06g070930.2.1 | Tomato | plastid | 10.8 | 36.5 |
| AT1G67940.1 | Thale cress | cytosol | 6.91 | 24.33 |
| AT5G14100.1 | Thale cress | plastid | 7.02 | 23.38 |
| AT5G61730.2 | Thale cress | plasma membrane, plastid | 23.87 | 23.26 |
| AT3G47730.1 | Thale cress | mitochondrion, plasma membrane | 24.51 | 23.09 |
| AT5G61690.2 | Thale cress | plasma membrane | 23.43 | 22.77 |
| AT1G65410.1 | Thale cress | plastid | 7.78 | 20.87 |
| AT2G41700.1 | Thale cress | mitochondrion, plasma membrane | 20.52 | 10.1 |
Protein Annotations
| MapMan:24.1.3.2.1 | Gene3D:3.40.50.300 | EntrezGene:823931 | InterPro:AAA+_ATPase | InterPro:ABCA | InterPro:ABC_transporter-like |
| InterPro:ABC_transporter_CS | ProteinID:AEE78327.1 | ProteinID:ANM65245.1 | ProteinID:ANM65246.1 | ArrayExpress:AT3G47770 | EnsemblPlantsGene:AT3G47770 |
| RefSeq:AT3G47770 | TAIR:AT3G47770 | RefSeq:AT3G47770-TAIR-G | EnsemblPlants:AT3G47770.2 | Symbol:ATATH5 | Unigene:At.53824 |
| ProteinID:CAB41860.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
| GO:GO:0043231 | GO:GO:0055085 | InterPro:IPR003439 | RefSeq:NP_001327229.1 | RefSeq:NP_001327230.1 | RefSeq:NP_190361.2 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF12698 | ScanProsite:PS00211 | PFscan:PS50893 | PANTHER:PTHR19229 |
| PANTHER:PTHR19229:SF141 | UniProt:Q9STT6 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0001B04BC6 |
| SEG:seg | : | : | : | : | : |
Description
ABCA6ABC transporter A family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT6]
Coordinates
chr3:+:17617972..17622915
Molecular Weight (calculated)
104604.0 Da
IEP (calculated)
8.467
GRAVY (calculated)
-0.002
Length
926 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKPVAASFL TQANALFKKN LTYQKRNIWS NVRLIVIPLY LCVVLVCIQA VFDSLVNNSV DNQCGCRCAD DDKNGDGKCE IKSCGLQYSS QNQAVFCAFP
101: NPPPLLPLLH IPPSVNRDSC QRTGSCPVTI LVTGNNQSLG TTLSENLLST SFTVNSSSDL FLRNLAYNVL STTSETDYTN YRDPGIYSDL PIFNIQPQCT
201: PATILSLSFR QPPLEFHKEV RCVQGLNLWR NNSLEVNDEI FKGFRKENHE EIINEVAAAY DLLNTDRNKF NVTIWYYTTY KGDLQDWRVK YVRVPRSVNM
301: VSNAYLQFLR GPGTKILFDF VKEMPKQETR LRMDMASLIG PIFFTWVILL LFPVILTSLV YEKQQRLRII MKMHGLGDAP YWMISYAYFL AISTLYIVCL
401: MIFGSAIGLK FFRFNDYTIQ FMFYFLYINL QISIAFLVSS AFSKAVTASV VAYIYVFGSG LLGAFLFQFL IESLSFPRRW IFVMELYPGF SLYRGLYEFS
501: QYAFQRNLNG RDGMKWKDFR GSAMDEVFTI IIVEWVVALV ATYYIDRVSS SSKDTFAFLK NPFKLSPTPQ MLSFQKERSD VSVEMEKLDV IQEKETVKQL
601: IFERSKNHGI VCDNLKKVYQ GRDGNPPKLA VCGLSLAVPS GECFGMLGPN GAGKTSFINM MTGLVKPSSG SAFVQGLDIC KDMDKVYISM GVCPQHDLLW
701: ETLTGKEHLL FYGRLKNLKG HDLNQAVEES LKSVNLFHGG VADIPAGKYS GGMKRRLSVA ISLIGSPKVV YMDEPSTGLD PASRINLWTV IKRAKKHAAI
801: ILTTHSMEEA EFLCDRLGIF VDGRLQCIGN PKELKGRYGG SYVLTITTSP EHEKDVETLV QEVSSNARKI YHIAGTQKFE FPKEEVRISE VFQAVENAKR
901: NFTVFAWGFA DTTLEDVFIK VAKTGL
101: NPPPLLPLLH IPPSVNRDSC QRTGSCPVTI LVTGNNQSLG TTLSENLLST SFTVNSSSDL FLRNLAYNVL STTSETDYTN YRDPGIYSDL PIFNIQPQCT
201: PATILSLSFR QPPLEFHKEV RCVQGLNLWR NNSLEVNDEI FKGFRKENHE EIINEVAAAY DLLNTDRNKF NVTIWYYTTY KGDLQDWRVK YVRVPRSVNM
301: VSNAYLQFLR GPGTKILFDF VKEMPKQETR LRMDMASLIG PIFFTWVILL LFPVILTSLV YEKQQRLRII MKMHGLGDAP YWMISYAYFL AISTLYIVCL
401: MIFGSAIGLK FFRFNDYTIQ FMFYFLYINL QISIAFLVSS AFSKAVTASV VAYIYVFGSG LLGAFLFQFL IESLSFPRRW IFVMELYPGF SLYRGLYEFS
501: QYAFQRNLNG RDGMKWKDFR GSAMDEVFTI IIVEWVVALV ATYYIDRVSS SSKDTFAFLK NPFKLSPTPQ MLSFQKERSD VSVEMEKLDV IQEKETVKQL
601: IFERSKNHGI VCDNLKKVYQ GRDGNPPKLA VCGLSLAVPS GECFGMLGPN GAGKTSFINM MTGLVKPSSG SAFVQGLDIC KDMDKVYISM GVCPQHDLLW
701: ETLTGKEHLL FYGRLKNLKG HDLNQAVEES LKSVNLFHGG VADIPAGKYS GGMKRRLSVA ISLIGSPKVV YMDEPSTGLD PASRINLWTV IKRAKKHAAI
801: ILTTHSMEEA EFLCDRLGIF VDGRLQCIGN PKELKGRYGG SYVLTITTSP EHEKDVETLV QEVSSNARKI YHIAGTQKFE FPKEEVRISE VFQAVENAKR
901: NFTVFAWGFA DTTLEDVFIK VAKTGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.