Factsheet for AT3G47750.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 4
endoplasmic reticulum 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G47760.3	Thale cress	plasma membrane	85.59	85.68
AT3G47770.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	80.58	81.53
Bra018115.1-P	Field mustard	plasma membrane	78.55	79.48
CDY36932	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	75.13	79.46
CDY24158	Canola	plasma membrane	78.01	78.94
Bra018114.1-P	Field mustard	cytosol, peroxisome, plasma membrane	52.83	78.7
AT3G47740.1	Thale cress	plasma membrane	76.41	76.82
AT3G47780.1	Thale cress	plasma membrane	76.41	76.58
CDY36931	Canola	plastid	75.99	76.48
CDY24157	Canola	plastid	77.48	76.34
AT5G61700.1	Thale cress	plasma membrane	65.74	67.18
AT5G61740.1	Thale cress	plasma membrane	64.67	66.67
KRH54520	Soybean	plasma membrane, plastid	56.88	66.05
AT3G47790.1	Thale cress	plasma membrane	62.33	64.82
Solyc03g113040.2.1	Tomato	plastid	63.18	62.65
KRH63384	Soybean	plasma membrane	48.03	61.81
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	32.12	61.3
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	41.62	61.13
TraesCS7A01G367700.1	Wheat	plasma membrane	37.03	61.09
Solyc03g113060.2.1	Tomato	extracellular	61.05	60.59
KRH56933	Soybean	plasma membrane, plastid	60.09	59.33
KRH03450	Soybean	plasma membrane, plastid	59.77	58.7
TraesCS1D01G345200.1	Wheat	plasma membrane	56.67	55.78
TraesCS1A01G343000.1	Wheat	plasma membrane	56.67	55.72
KXG25097	Sorghum	plasma membrane	56.78	55.53
TraesCS1B01G356200.1	Wheat	plasma membrane	56.35	55.46
HORVU1Hr1G075620.5	Barley	plasma membrane	55.82	54.82
HORVU4Hr1G087670.8	Barley	mitochondrion	55.92	54.58
TraesCS4B01G365000.1	Wheat	plasma membrane	56.56	53.86
Os08t0398300-01	Rice	plasma membrane	54.96	53.81
Os06t0589300-01	Rice	plasma membrane	54.43	53.74
Solyc06g070950.1.1	Tomato	plasma membrane	51.01	53.65
Zm00001d050259_P002	Maize	plasma membrane	56.24	53.56
TraesCS7D01G355100.1	Wheat	plastid	54.32	53.3
TraesCSU01G138200.1	Wheat	plasma membrane	56.35	52.91
OQU89360	Sorghum	plasma membrane	53.47	52.85
TraesCS7B01G260800.1	Wheat	plastid	53.9	52.82
Zm00001d020208_P003	Maize	plasma membrane	53.15	52.53
EER89983	Sorghum	plastid	53.47	52.52
TraesCS3D01G368700.2	Wheat	plasma membrane	54.22	52.48
TraesCS5D01G195700.1	Wheat	plasma membrane	52.83	52.33
TraesCS5A01G193200.1	Wheat	plasma membrane	52.72	52.22
VIT_07s0095g00600.t01	Wine grape	extracellular	3.84	52.17
Zm00001d036927_P001	Maize	plasma membrane, plastid	53.68	52.12
TraesCS5A01G534100.3	Wheat	cytosol	56.14	52.08
HORVU7Hr1G085680.2	Barley	endoplasmic reticulum, peroxisome, plastid	54.32	51.36
TraesCS5B01G188600.1	Wheat	plasma membrane	51.44	50.74
HORVU5Hr1G056930.20	Barley	plasma membrane	52.72	50.56
GSMUA_Achr7P23890_001	Banana	plasma membrane	58.7	47.01
GSMUA_Achr3P20510_001	Banana	plasma membrane	55.92	44.67
HORVU3Hr1G030470.1	Barley	cytosol, extracellular, plasma membrane	7.15	39.88
HORVU6Hr1G043820.1	Barley	cytosol, endoplasmic reticulum, plasma membrane	7.04	39.29
Solyc06g070930.2.1	Tomato	plastid	11.31	38.69
HORVU4Hr1G039510.1	Barley	cytosol	6.83	38.1
AT5G61730.2	Thale cress	plasma membrane, plastid	25.19	24.84
AT5G14100.1	Thale cress	plastid	7.15	24.1
AT5G61690.2	Thale cress	plasma membrane	24.33	23.92
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	24.97	23.8
AT1G67940.1	Thale cress	cytosol	6.62	23.57
AT1G65410.1	Thale cress	plastid	7.47	20.29
AT2G41700.1	Thale cress	mitochondrion, plasma membrane	20.49	10.2

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	EntrezGene:823929	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ProteinID:AEE78325.2	ArrayExpress:AT3G47750	EnsemblPlantsGene:AT3G47750	RefSeq:AT3G47750	TAIR:AT3G47750
RefSeq:AT3G47750-TAIR-G	EnsemblPlants:AT3G47750.1	TAIR:AT3G47750.1	Symbol:ATATH3	ProteinID:CAB41858.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0043231	GO:GO:0055085
InterPro:IPR003439	RefSeq:NP_001319703.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF12698	PO:PO:0000005
PO:PO:0000293	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF141	UniProt:Q9STT8
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0001B04BC4	SEG:seg	:

Description

ABCA4ABC transporter A family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT8]

Coordinates

chr3:+:17606359..17611065

Molecular Weight (calculated)

105489.0 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.028

Length

937 amino acids

Sequence
(BLAST)

001: MANHVPASFL TRANALFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCIH KNGDGKCERK SCGLQYSSLT QASFCAFPNP
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.