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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, mitochondrion, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24157 Canola plastid 95.87 63.41
CDY36931 Canola plastid 93.48 63.16
Bra033786.1-P Field mustard cytosol, mitochondrion, nucleus 26.39 55.7
Bra015049.1-P Field mustard plasma membrane 77.11 54.31
KRH54520 Soybean plasma membrane, plastid 69.16 53.9
Solyc06g070920.2.1 Tomato extracellular, plasma membrane 54.37 53.6
Bra018113.1-P Field mustard plasma membrane 79.49 53.08
Bra018115.1-P Field mustard plasma membrane 78.06 53.02
AT3G47760.3 Thale cress plasma membrane 78.86 52.99
AT3G47750.1 Thale cress mitochondrion, plasma membrane 78.7 52.83
Bra033785.1-P Field mustard plasma membrane 78.38 52.34
Bra012931.1-P Field mustard cytosol, peroxisome, plasma membrane 48.81 51.86
TraesCS7A01G367700.1 Wheat plasma membrane 45.95 50.88
KRG88422 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 38.47 49.29
Solyc03g113040.2.1 Tomato plastid 67.57 44.97
Bra019513.1-P Field mustard plasma membrane 62.48 44.01
Solyc03g113060.2.1 Tomato extracellular 65.98 43.96
Bra012927.1-P Field mustard cytosol 42.93 43.9
KRH56933 Soybean plasma membrane, plastid 65.18 43.2
KRH03450 Soybean plasma membrane, plastid 64.39 42.45
KRH63384 Soybean plasma membrane 48.49 41.9
KXG25097 Sorghum plasma membrane 61.53 40.4
TraesCS1D01G345200.1 Wheat plasma membrane 61.05 40.34
TraesCS1A01G343000.1 Wheat plasma membrane 60.89 40.19
Solyc06g070950.1.1 Tomato plasma membrane 56.92 40.18
TraesCS1B01G356200.1 Wheat plasma membrane 60.57 40.02
Os08t0398300-01 Rice plasma membrane 60.89 40.02
HORVU1Hr1G075620.5 Barley plasma membrane 59.94 39.52
HORVU4Hr1G087670.8 Barley mitochondrion 60.1 39.38
OQU89360 Sorghum plasma membrane 58.82 39.03
TraesCS4B01G365000.1 Wheat plasma membrane 60.89 38.92
Zm00001d050259_P002 Maize plasma membrane 60.57 38.72
Zm00001d020208_P003 Maize plasma membrane 58.19 38.61
TraesCS5D01G195700.1 Wheat plasma membrane 57.71 38.37
TraesCSU01G138200.1 Wheat plasma membrane 60.73 38.28
TraesCS5A01G193200.1 Wheat plasma membrane 57.55 38.27
TraesCS5B01G188600.1 Wheat plasma membrane 57.23 37.89
TraesCS5A01G534100.3 Wheat cytosol 60.73 37.82
TraesCS7B01G260800.1 Wheat plastid 57.23 37.66
TraesCS7D01G355100.1 Wheat plastid 56.92 37.49
Os06t0589300-01 Rice plasma membrane 56.44 37.41
HORVU5Hr1G056930.20 Barley plasma membrane 57.71 37.15
EER89983 Sorghum plastid 56.28 37.11
TraesCS3D01G368700.2 Wheat plasma membrane 57.07 37.09
HORVU7Hr1G085680.2 Barley endoplasmic reticulum, peroxisome, plastid 58.03 36.83
Zm00001d036927_P001 Maize plasma membrane, plastid 56.28 36.68
HORVU6Hr1G043820.1 Barley cytosol, endoplasmic reticulum, plasma membrane 9.54 35.71
HORVU3Hr1G030470.1 Barley cytosol, extracellular, plasma membrane 9.38 35.12
GSMUA_Achr7P23890_001 Banana plasma membrane 64.23 34.53
HORVU4Hr1G039510.1 Barley cytosol 9.22 34.52
GSMUA_Achr3P20510_001 Banana plasma membrane 63.12 33.84
Bra008779.1-P Field mustard plastid 10.17 23.36
Bra004271.1-P Field mustard cytosol 9.54 22.73
Bra022481.1-P Field mustard plastid 11.13 21.28
Bra012928.1-P Field mustard plasma membrane 27.98 18.99
Bra018116.1-P Field mustard golgi, mitochondrion 28.93 18.46
Bra012930.1-P Field mustard plasma membrane 24.64 17.07
Bra038152.1-P Field mustard plasma membrane, vacuole 7.15 10.98
Bra000236.1-P Field mustard mitochondrion 23.21 7.93
Solyc06g070930.2.1 Tomato plastid 2.86 6.57
VIT_07s0095g00600.t01 Wine grape extracellular 0.64 5.8
Protein Annotations
MapMan:24.1.3.2.1Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABCAInterPro:ABC_transporter-likeInterPro:ABC_transporter_CS
EnsemblPlantsGene:Bra018114EnsemblPlants:Bra018114.1EnsemblPlants:Bra018114.1-PGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085
InterPro:IPR003439UniProt:M4DNM7InterPro:P-loop_NTPasePFAM:PF00005ScanProsite:PS00211PFscan:PS50893
PANTHER:PTHR19229PANTHER:PTHR19229:SF141SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI000253F3E7
SEG:seg:::::
Description
AT3G47750 (E=1e-205) ATATH3, ABCA4 | ABCA4 (ATP BINDING CASSETTE SUBFAMILY A4); ATPase, coupled to transmembrane movement of substances / transporter
Coordinates
chrA06:-:10319300..10322572
Molecular Weight (calculated)
71596.1 Da
IEP (calculated)
8.782
GRAVY (calculated)
-0.089
Length
629 amino acids
Sequence
(BLAST)
001: MEVNNEIFEG YQKENHEESI NEIVAAYDLL DTNRNNFNVT IWYNSTYKFN IKDRRVKLVQ VPRSVNLVSN AYLHFLQGPG TKMLFEYVKE VPKLESRLRL
101: DIASLIGPLF FTWVILLLFP VILTSLVYEK QQRLRIIMKM HGLGDGPYWM ISYVYYLIIS TLYIISLMIF GSAIGRWIFF MELYPGFSLY RGLYEFSIYA
201: YQKNVTGRDG MKLKDFTNSA MDEVFYIIIV EWFVALIATY YIDQGSLSME DSFSFLRKKF KQSLYPQKPR TSMQSSSVTV EMEKLDVTQE RDKVEKLMLE
301: PSTSHAIVCD NLKKVYPRRD GNPPKMAVRG LSLVVASKEC FGMLGPNGAG KTSFINTMTG LVKPTSGAAF VQGLDICKDM DKVYTSMGVC PQHDLLWETL
401: TGREHLLFYG RLKNLKGSEL NQVCYINLTS LLYNFRGVAD KPAGKYSGGM KRRLSVAISL IGSPKVVYMD EPSTGLDPAS RMNLWTAIKR AKRHTAIILT
501: THSMEEAEFL CDRLGIFVDG RLQCIGNPKE LKARYGGSYV FTMTTSSEHE QDVEMLVQDL SPNAKKIYHI AGTQKFEIPK GEVGISKVFE AVEKAKSSFT
601: VFAWGLEDTT LEDVFIKVAR GAHDFNVLS
Best Arabidopsis Sequence Match ( AT3G47750.1 )
(BLAST)
001: MANHVPASFL TRANALFRKN LTYQKRNIWS NVRLIVIPFY LCVLLVGIQV LFDTQVNNSA DNRCGCRCIH KNGDGKCERK SCGLQYSSLT QASFCAFPNP
101: PPLLPLLQIP RPETRLVDPA RSSCRRTGSC PVTILVTGNN HTLGETLSRN LLSTSFAVNS SDHFLRNLAY NVLGTISEAD YTNYLDPGIH SDLPIFQIRP
201: YCTPTTNLSF SFRQPPITFH KEVRCVQGLN LWRNNSVEVN DEIFKGYRQG NHEEIINEVA AAYDLLDTDR NKFNVTIWYN SSYKGNFKVQ DRRVKYVRVP
301: RSVNMVSNAY LRFLRGPGTK MLFDFVKEMP KQESMLRVDI ASVIGPIFLT WVIVLLFPVI LNSLVYEKQQ HLRIIMKMHG LGDGPYWMIT YAYFLAISTL
401: YIICLMIFGS AIGLKFFRFN DYSIQFIFYF LCINLQISIA FLVSSAFSKV ETASVAAYLY VFGSGLLGGF LFQFMLEGLS FPRGWIFVME LYPGFSLYRG
501: LYEFSQYALK RQLNGSDGMK WKYFSDSAMD EVFYIIIIEW FLALIAAYYM DRVSSSAKDP FLFLKNLIKK SPSPQRHSLQ RLGSSVSVEM EKLDVVEERA
601: KVEQLMLESS TSHAIVCDKL KKVYPGRDGN PPKMAVGGLS IAVPPGECFG MLGPNGAGKT SFINMMTGLV KPTSGTALVE SLDICQDMDK VYTSMGVCPQ
701: HDLLWETLTG REHLLFYGRL KNLKGSDLNQ AIEESLKSVN LSREGVADKP AGKYSGGMKR RLSVAISLIG SPKVVYMDEP STGLDPASRR SLWTAIKGAK
801: KHTAIILTTH SMEEAEFLCD RLGIFVDGRL QCVGNPKELK ARYGGSYVLT MTTSSEHEKD VEMLIQDVSP NAKKIYHIAG TQKFEIPKDE VRIAELFQAV
901: EKAKGNFRVF AWGLADTTLE DVFIKVARTA QASNVFS
Arabidopsis Description
ABCA4ABC transporter A family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STT8]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.