Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G47760.3 | Thale cress | plasma membrane | 78.22 | 77.88 |
| AT3G47780.1 | Thale cress | plasma membrane | 76.82 | 76.58 |
| AT3G47750.1 | Thale cress | mitochondrion, plasma membrane | 76.82 | 76.41 |
| AT3G47770.2 | Thale cress | endoplasmic reticulum, golgi, plasma membrane, plastid | 74.68 | 75.16 |
| AT5G61740.1 | Thale cress | plasma membrane | 65.34 | 67.0 |
| AT5G61700.1 | Thale cress | plasma membrane | 65.13 | 66.19 |
| AT3G47790.1 | Thale cress | plasma membrane | 63.73 | 65.93 |
| KRH54520 | Soybean | plasma membrane, plastid | 56.76 | 65.55 |
| Solyc03g113040.2.1 | Tomato | plastid | 64.06 | 63.17 |
| KRH63384 | Soybean | plasma membrane | 48.93 | 62.64 |
| Solyc06g070920.2.1 | Tomato | extracellular, plasma membrane | 42.7 | 62.38 |
| Solyc03g113060.2.1 | Tomato | extracellular | 62.02 | 61.23 |
| KRG88422 | Soybean | cytosol, mitochondrion, peroxisome, plasma membrane | 32.08 | 60.9 |
| TraesCS7A01G367700.1 | Wheat | plasma membrane | 37.02 | 60.74 |
| KRH56933 | Soybean | plasma membrane, plastid | 60.19 | 59.11 |
| KRH03450 | Soybean | plasma membrane, plastid | 59.66 | 58.28 |
| KXG25097 | Sorghum | plasma membrane | 56.87 | 55.32 |
| TraesCS1D01G345200.1 | Wheat | plasma membrane | 56.01 | 54.83 |
| TraesCS1A01G343000.1 | Wheat | plasma membrane | 55.79 | 54.56 |
| Os08t0398300-01 | Rice | plasma membrane | 55.79 | 54.34 |
| TraesCS1B01G356200.1 | Wheat | plasma membrane | 55.36 | 54.2 |
| HORVU4Hr1G087670.8 | Barley | mitochondrion | 55.69 | 54.06 |
| HORVU1Hr1G075620.5 | Barley | plasma membrane | 54.72 | 53.46 |
| Solyc06g070950.1.1 | Tomato | plasma membrane | 50.86 | 53.2 |
| Os06t0589300-01 | Rice | plasma membrane | 54.08 | 53.11 |
| Zm00001d050259_P002 | Maize | plasma membrane | 55.79 | 52.85 |
| OQU89360 | Sorghum | plasma membrane | 53.54 | 52.64 |
| TraesCS7D01G355100.1 | Wheat | plastid | 53.86 | 52.57 |
| Zm00001d020208_P003 | Maize | plasma membrane | 53.43 | 52.53 |
| TraesCS7B01G260800.1 | Wheat | plastid | 53.65 | 52.3 |
| TraesCS4B01G365000.1 | Wheat | plasma membrane | 55.04 | 52.13 |
| EER89983 | Sorghum | plastid | 53.33 | 52.1 |
| TraesCS5D01G195700.1 | Wheat | plasma membrane | 52.79 | 52.01 |
| TraesCS5A01G193200.1 | Wheat | plasma membrane | 52.68 | 51.9 |
| Zm00001d036927_P001 | Maize | plasma membrane, plastid | 53.65 | 51.81 |
| TraesCSU01G138200.1 | Wheat | plasma membrane | 55.26 | 51.6 |
| TraesCS3D01G368700.2 | Wheat | plasma membrane | 53.22 | 51.24 |
| TraesCS5A01G534100.3 | Wheat | cytosol | 55.26 | 50.99 |
| HORVU7Hr1G085680.2 | Barley | endoplasmic reticulum, peroxisome, plastid | 53.86 | 50.66 |
| TraesCS5B01G188600.1 | Wheat | plasma membrane | 51.39 | 50.42 |
| HORVU5Hr1G056930.20 | Barley | plasma membrane | 52.58 | 50.15 |
| VIT_07s0095g00600.t01 | Wine grape | extracellular | 3.65 | 49.28 |
| GSMUA_Achr7P23890_001 | Banana | plasma membrane | 58.69 | 46.75 |
| GSMUA_Achr3P20510_001 | Banana | plasma membrane | 56.44 | 44.84 |
| HORVU6Hr1G043820.1 | Barley | cytosol, endoplasmic reticulum, plasma membrane | 7.3 | 40.48 |
| HORVU3Hr1G030470.1 | Barley | cytosol, extracellular, plasma membrane | 7.08 | 39.29 |
| HORVU4Hr1G039510.1 | Barley | cytosol | 7.08 | 39.29 |
| Solyc06g070930.2.1 | Tomato | plastid | 10.84 | 36.86 |
| AT5G61730.2 | Thale cress | plasma membrane, plastid | 24.46 | 24.0 |
| AT1G67940.1 | Thale cress | cytosol | 6.65 | 23.57 |
| AT5G61690.2 | Thale cress | plasma membrane | 23.93 | 23.4 |
| AT3G47730.1 | Thale cress | mitochondrion, plasma membrane | 24.46 | 23.19 |
| AT5G14100.1 | Thale cress | plastid | 6.87 | 23.02 |
| AT1G65410.1 | Thale cress | plastid | 7.94 | 21.45 |
| AT2G41700.1 | Thale cress | mitochondrion, plasma membrane | 20.28 | 10.04 |
Protein Annotations
| MapMan:24.1.3.2.1 | Gene3D:3.40.50.300 | EntrezGene:823928 | InterPro:AAA+_ATPase | InterPro:ABCA | InterPro:ABC_transporter-like |
| InterPro:ABC_transporter_CS | ProteinID:AEE78324.1 | ArrayExpress:AT3G47740 | EnsemblPlantsGene:AT3G47740 | RefSeq:AT3G47740 | TAIR:AT3G47740 |
| RefSeq:AT3G47740-TAIR-G | EnsemblPlants:AT3G47740.1 | TAIR:AT3G47740.1 | Symbol:ATATH2 | Unigene:At.53821 | ProteinID:CAB41857.1 |
| EMBL:DQ446742 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
| GO:GO:0043231 | GO:GO:0055085 | InterPro:IPR003439 | RefSeq:NP_190358.3 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFAM:PF12698 | ScanProsite:PS00211 | PFscan:PS50893 | PANTHER:PTHR19229 | PANTHER:PTHR19229:SF141 | UniProt:Q1PEH6 |
| SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0001E92D9F | SEG:seg | : |
Description
ABCA3ABC transporter A family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEH6]
Coordinates
chr3:+:17600521..17605128
Molecular Weight (calculated)
105343.0 Da
IEP (calculated)
8.855
GRAVY (calculated)
0.016
Length
932 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSGPASFW TRANAILRKN LTYQKRNIWS NVRLIMIPFY LCIVLVFIQA LFDSQVNNSL DNQCGCQCID KLGDGKCQMT CGLEYSTRDQ GFFCAIPKPQ
101: PWPPLILIPR PEYRALDANF TNDSCRRKNS CPVTILFTGN NHSLGAVLSR NLLRRPFAMN SSDLLFSLAN NVLATTFKGS ATNYLDAGIV SDGSIYNIQP
201: RCPPNSNFSI SIGQSPLNFT KDMRCVQGLN LWRNNSIEVN LELFEGYHKG NSDGMINEIV AAYDLFDTNM TNFNVNIWFN ATYKDEARNQ PYKVVRVPRL
301: VNWVSNAYLQ YLQGPRTKML FEFVKEMPKP ETKLRLDIAS LIGPIFFTWV ILLLLPVILN SLVYEKQQRL RIIMKMHGLG DGPYWIISYA YFLALSTFYI
401: IFLMIFGSVI GLKFFLLNDF SLQFSFYFVY INLQISIAFL LSSAFSKVET ASVAAYLYVF GSGLLGMFLF QFLLEGLSFP RRWIFVMELY PGFSLYRGLY
501: EFSQNAYQGN LNGKDGMKWK YFSDNAIDEV FYIIIVEWFV ALIATYYIDK MSSSGKDLLF FLKNQNPFKI SHSLQKQVSA ISVEMEKLDV IHESEKVAQL
601: MLESSTSHAI VCDKLRKVYP GRDGNPPKKA VRVLSLAVPS GECFGMLGPN GAGKTSFINM MTGLVKPTSG AAFVQGLDIC KDMDRVYTSM GVCPQHDLLW
701: ETLTGREHLL FYGRLKNLKG VDLNQAVEES LRSVNLFHGG VADKPAGKYS GGMKRRLSVA ISLIGNPKVV YMDEPSTGLD PASRKNLWTV IKNAKRHTAI
801: ILTTHSMEEA EFLCDRLGIF VDGRLQCIGN PKELKGRYGG SYVLTMTTSS EHEKDVEMLV QEVSPNVKKI YHIAGTQKFE IPKDEVRISE VFQVVEKAKS
901: NFKVFAWGLA DTTLEDVFIK VARTAQAFNV FS
101: PWPPLILIPR PEYRALDANF TNDSCRRKNS CPVTILFTGN NHSLGAVLSR NLLRRPFAMN SSDLLFSLAN NVLATTFKGS ATNYLDAGIV SDGSIYNIQP
201: RCPPNSNFSI SIGQSPLNFT KDMRCVQGLN LWRNNSIEVN LELFEGYHKG NSDGMINEIV AAYDLFDTNM TNFNVNIWFN ATYKDEARNQ PYKVVRVPRL
301: VNWVSNAYLQ YLQGPRTKML FEFVKEMPKP ETKLRLDIAS LIGPIFFTWV ILLLLPVILN SLVYEKQQRL RIIMKMHGLG DGPYWIISYA YFLALSTFYI
401: IFLMIFGSVI GLKFFLLNDF SLQFSFYFVY INLQISIAFL LSSAFSKVET ASVAAYLYVF GSGLLGMFLF QFLLEGLSFP RRWIFVMELY PGFSLYRGLY
501: EFSQNAYQGN LNGKDGMKWK YFSDNAIDEV FYIIIVEWFV ALIATYYIDK MSSSGKDLLF FLKNQNPFKI SHSLQKQVSA ISVEMEKLDV IHESEKVAQL
601: MLESSTSHAI VCDKLRKVYP GRDGNPPKKA VRVLSLAVPS GECFGMLGPN GAGKTSFINM MTGLVKPTSG AAFVQGLDIC KDMDRVYTSM GVCPQHDLLW
701: ETLTGREHLL FYGRLKNLKG VDLNQAVEES LRSVNLFHGG VADKPAGKYS GGMKRRLSVA ISLIGNPKVV YMDEPSTGLD PASRKNLWTV IKNAKRHTAI
801: ILTTHSMEEA EFLCDRLGIF VDGRLQCIGN PKELKGRYGG SYVLTMTTSS EHEKDVEMLV QEVSPNVKKI YHIAGTQKFE IPKDEVRISE VFQVVEKAKS
901: NFKVFAWGLA DTTLEDVFIK VARTAQAFNV FS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.