Factsheet for Solyc06g070960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	11.45	62.35
Solyc03g113080.2.1	Tomato	cytosol	22.89	59.22
VIT_17s0000g05850.t01	Wine grape	plasma membrane	60.15	58.14
CDX68435	Canola	mitochondrion, plastid	16.31	57.85
PGSC0003DMT400046727	Potato	plasma membrane	57.67	57.17
CDY24159	Canola	golgi, mitochondrion	57.13	56.46
CDY23042	Canola	plasma membrane	56.7	56.03
AT5G61730.2	Thale cress	plasma membrane, plastid	57.45	56.0
AT5G61690.2	Thale cress	plasma membrane	57.56	55.93
Bra012928.1-P	Field mustard	plasma membrane	55.72	55.66
CDY23040	Canola	plasma membrane	57.24	55.56
KRH54517	Soybean	plasma membrane	57.99	55.53
GSMUA_Achr7P23880_001	Banana	plasma membrane	57.45	55.53
CDY02116	Canola	plasma membrane	50.11	55.24
CDY36933	Canola	golgi, mitochondrion	57.56	55.23
Bra018116.1-P	Field mustard	golgi, mitochondrion	58.75	55.17
CDY23800	Canola	plasma membrane	54.43	55.08
CDY64180	Canola	plasma membrane	37.26	55.02
AT3G47730.1	Thale cress	mitochondrion, plasma membrane	58.32	54.93
Solyc03g113070.2.1	Tomato	plasma membrane	34.13	54.86
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	56.59	54.53
CDY62594	Canola	cytosol	26.89	54.49
CDY52820	Canola	cytosol, nucleus, plasma membrane	51.62	54.44
Os08t0398000-01	Rice	plasma membrane	56.48	54.03
Zm00001d032279_P005	Maize	golgi, plastid	56.59	54.02
TraesCS1D01G345100.2	Wheat	mitochondrion, plasma membrane, plastid	56.26	53.99
TraesCS1B01G356100.2	Wheat	plasma membrane	56.16	53.94
TraesCS1A01G342900.2	Wheat	plasma membrane	56.16	53.83
GSMUA_Achr3P20560_001	Banana	plastid	16.63	53.66
KRH63387	Soybean	plasma membrane, plastid	55.4	53.33
CDY02118	Canola	plasma membrane	56.59	52.66
Bra012930.1-P	Field mustard	plasma membrane	51.4	52.42
HORVU1Hr1G075640.9	Barley	golgi	55.4	52.4
Solyc06g070940.2.1	Tomato	plasma membrane	52.81	51.86
CDY62596	Canola	cytosol, plasma membrane, vacuole	16.52	49.84
CDX68434	Canola	plasma membrane	37.47	48.87
Solyc06g070920.2.1	Tomato	extracellular, plasma membrane	19.65	28.53
Solyc06g070950.1.1	Tomato	plasma membrane	23.33	24.24
Solyc03g113040.2.1	Tomato	plastid	24.62	24.13
Solyc03g113060.2.1	Tomato	extracellular	24.3	23.83
Solyc06g068600.2.1	Tomato	cytosol	4.21	21.08
Solyc02g068180.2.1	Tomato	plastid	6.16	20.8
Solyc03g117810.2.1	Tomato	cytosol	5.51	19.39
Solyc04g056650.2.1	Tomato	plastid	6.91	18.29
Solyc04g015970.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	26.57	12.89
Solyc06g070930.2.1	Tomato	plastid	2.7	9.12

Protein Annotations

MapMan:24.1.3.2.1	Gene3D:3.40.50.300	MapMan:5.8.5	InterPro:AAA+_ATPase	InterPro:ABCA	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0043231	GO:GO:0055085	InterPro:IPR003439	UniProt:K4C8G9	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF12698	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19229	PANTHER:PTHR19229:SF193	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc06g070960.1	EnsemblPlants:Solyc06g070960.1.1	TMHMM:TMhelix	UniParc:UPI0002766D38	SEG:seg

Description

No Description!

Coordinates

chr6:+:43576863..43582288

Molecular Weight (calculated)

103913.0 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.039

Length

926 amino acids

Sequence
(BLAST)

001: MAMELQQRGF SLFWQQTIAL LKKNFLLSMR SKRATFLQLF SSLFFLGLLF GIQKGMDFRS KHPSTIRAVN DPQPLTNPPI PPCEHKFFIK HPCYDFVWSG
101: SGNKRIESIV SGILANNPGR PIPSTKVKSF GTKDDLNNWL LSDPMRTPGA LHFVERNATV ISYGVVTNSS TYIKVPRASE DPTFKFQLPL QLAASREIAR
201: SLLGDSKFSW NVGLKEFARP AIEDPEAGDS FQDSSFGNIF SQIFFYAVSM FGFVFQISTM VLEKELKLRQ AMTVMGLFDS AYWCSWLLWE GIMTFLSSLL
301: IVLFGMMFQL HLFLKNSFLI VLLLFFLFQL NMAFAGMLYG STDHKTRYRR ILWSFFPPNP FSGGLVTLLY GVEHGGISWS KPSPGDDSSC YSMLHFYRWL
401: IATFFLWLVL AIYLDNILPN SAGVRKPFYY FLKPGYWTGR GEEKFKENTL CCGSGSSPPN DSFSQDDEDV LDEENRVKQQ VKEGNVDPNV AVQLQDLYKM
501: YSRTINFSCH SCCLLCCYCR CKIKKPFKAV QGLWLNLEKD QLFCLLGPNG AGKTTVISCL TGIISVTRGN ALIYGNSVRS SVGISNIRKL IGVCSQFDTL
601: WDALSGQEHL ELFATIKGLS RTSKRSEAKK LLADVKLDDV AEVRAGSYSG GMKRRLSLGI ALIGDPKVLF LDEPTTGMDP ITRRHIWSVI EAAKQGRSII
701: LTTHSMEEAD ILSDRIGIMA RGRLRCIGTS TLLKSRFGAG FIAKISFSKV ANDVNVMENT IDSKYHEAVK EFFRQRIDVT PKDEDKSFLT FIIPHEKERL
801: LENFFAELDN RKTELGILNI QIGLSTLEEV FLSIAKKAEL EGAASEGTIK PLILPSGTTL QVPVGSKYVE IPGTISAENP RGLMVEVYWE QDDHGNLCIS
901: GHSDETPVPP NLQISTSRLV TAKPRA

Best Arabidopsis Sequence Match ( AT3G47730.1 )
(BLAST)

001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS

Arabidopsis Description

ABCA2ATH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6R6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.