Factsheet for GSMUA_Achr1P08960_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022481.1-P	Field mustard	plastid	75.0	67.48
CDY16404	Canola	plastid	75.0	67.48
Zm00001d003145_P001	Maize	mitochondrion	28.72	67.46
CDY57805	Canola	plastid	74.66	67.17
VIT_04s0023g00290.t01	Wine grape	plastid	75.68	65.69
EER96343	Sorghum	plastid	77.03	64.59
TraesCS5B01G369900.1	Wheat	plastid	77.36	64.15
AT1G65410.1	Thale cress	plastid	74.66	64.06
Solyc04g056650.2.1	Tomato	plastid	75.68	64.0
KRH40333	Soybean	plastid	73.99	63.48
Os03t0670100-01	Rice	plastid	75.0	62.89
Zm00001d047131_P001	Maize	plastid	30.07	61.38
Zm00001d019644_P003	Maize	plastid	77.7	60.69
TraesCS5A01G367900.1	Wheat	golgi	77.03	59.84
HORVU5Hr1G091750.1	Barley	plastid	76.01	58.14
TraesCS5D01G377300.1	Wheat	cytosol, peroxisome, plastid	77.36	57.97
KRH00900	Soybean	plastid	72.3	54.18
CDY39288	Canola	cytosol	31.42	46.97
GSMUA_AchrUn_...	Banana	cytosol	10.14	25.0
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	25.68	24.52
GSMUA_Achr1P13520_001	Banana	plastid	21.96	20.77
GSMUA_Achr3P20540_001	Banana	cytosol, extracellular, nucleus	10.81	18.82
GSMUA_AchrUn_...	Banana	extracellular	9.12	8.01
GSMUA_Achr8P05670_001	Banana	plasma membrane	23.99	7.55
GSMUA_Achr3P20560_001	Banana	plastid	6.76	6.97
GSMUA_Achr7P23880_001	Banana	plasma membrane	20.95	6.47
GSMUA_Achr7P23890_001	Banana	plasma membrane	24.32	6.15
GSMUA_Achr3P20510_001	Banana	plasma membrane	23.65	5.97
GSMUA_Achr3P20520_001	Banana	plasma membrane, plastid	2.03	0.98
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	2.03	0.53
GSMUA_AchrUn_...	Banana	mitochondrion	0.34	0.27

Protein Annotations

Gene3D:3.40.50.300	MapMan:5.8.2.2.3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSMUA_Achr1G08960_001	EnsemblPlants:GSMUA_Achr1P08960_001	EnsemblPlants:GSMUA_Achr1T08960_001
InterPro:IPR003439	UniProt:M0RYA5	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR43023	PANTHER:PTHR43023:SF2	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00029690D0	:

Description

Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G08960_001]

Coordinates

chr1:+:6868713..6875637

Molecular Weight (calculated)

32521.3 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.110

Length

296 amino acids

Sequence
(BLAST)

001: MWESIYARQL LHFITSPLSK GWEAGTEFKE EPKVLIECRN VHKSFGDKQI LKGVSFKIRH GEAVGIIGPS GTGKSTILKV MAGLLSPDKG EVLICGRQRH
101: GLVSDGEISG LRIGLVFQSA ALFDSLSVRE NVGFLLYENS KMSADQISQL VTRNLEAVGL KGVEDRMPSE LSGGMKKRVA LARSIIFDDT KEVIEPEVLL
201: YDEPTAGLDP IASTVVEDLI RSVHSMGQDA LGQTGKIASY VVVTHQHSTI RRAVDRLLFL YDGRIVWEGK TDEFNTSMNP TVRQFASGSL DGPIKY

Best Arabidopsis Sequence Match ( AT1G65410.1 )
(BLAST)

001: MLSLSCSSSS SSLLPPSLHY HGSSSVQSIV VPRRSLISFR RKVSCCCIAP PQNLDNDATK FDSLTKSGGG MCKERGLEND SDVLIECRDV YKSFGEKHIL
101: KGVSFKIRHG EAVGVIGPSG TGKSTILKIM AGLLAPDKGE VYIRGKKRAG LISDEEISGL RIGLVFQSAA LFDSLSVREN VGFLLYERSK MSENQISELV
201: TQTLAAVGLK GVENRLPSEL SGGMKKRVAL ARSLIFDTTK EVIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHMTDEDAV GKPGKIASYL VVTHQHSTIQ
301: RAVDRLLFLY EGKIVWQGMT HEFTTSTNPI VQQFATGSLD GPIRY

Arabidopsis Description

TGD3Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9AT00]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.