Factsheet for VIT_11s0052g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068600.2.1	Tomato	cytosol	58.96	85.41
Zm00001d014611_P001	Maize	cytosol, mitochondrion, plasma membrane	52.24	74.47
KRH41857	Soybean	plasma membrane	70.15	72.31
Solyc03g117810.2.1	Tomato	cytosol	70.9	72.24
Bra004271.1-P	Field mustard	cytosol	70.9	71.97
CDX96058	Canola	cytosol	70.9	71.97
CDY01873	Canola	cytosol	70.52	71.59
PGSC0003DMT400036875	Potato	cytosol	70.15	71.48
AT1G67940.1	Thale cress	cytosol	69.03	70.34
PGSC0003DMT400074438	Potato	extracellular	73.13	70.0
TraesCS7A01G427700.1	Wheat	cytosol	65.67	67.69
TraesCS7B01G327900.1	Wheat	cytosol, golgi, mitochondrion	65.3	67.31
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	65.3	66.54
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	65.67	65.67
TraesCS4A01G414400.1	Wheat	cytosol	63.06	64.26
TraesCS4B01G315100.1	Wheat	cytosol	63.06	64.26
TraesCS4B01G336400.1	Wheat	cytosol, plastid	65.3	61.62
HORVU7Hr1G098490.2	Barley	plastid	65.67	60.27
TraesCS4D01G332100.1	Wheat	cytosol	63.81	59.79
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	67.54	58.39
HORVU4Hr1G079940.5	Barley	cytosol	62.31	53.53
Os06t0695800-01	Rice	unclear	68.28	52.89
Os10t0434900-00	Rice	cytosol, mitochondrion	24.63	49.25
VIT_14s0068g01730.t01	Wine grape	plastid	24.25	22.89
VIT_04s0023g00290.t01	Wine grape	plastid	27.99	21.99
VIT_12s0055g00730.t01	Wine grape	extracellular	7.46	15.75
VIT_18s0041g02240.t01	Wine grape	plasma membrane	20.15	7.34
VIT_17s0000g05860.t01	Wine grape	plasma membrane, plastid	24.25	6.85
VIT_17s0000g05850.t01	Wine grape	plasma membrane	21.27	5.95
VIT_08s0007g08730.t01	Wine grape	mitochondrion, plasma membrane	23.88	3.4
VIT_07s0095g00600.t01	Wine grape	extracellular	0.0	0.0

Protein Annotations

EntrezGene:100249647	wikigene:100249647	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EMBL:AM462422	ProteinID:CAN70271	ProteinID:CAN70271.1	ProteinID:CBI17869	ProteinID:CBI17869.3
UniProt:D7SQD8	EMBL:FN594964	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005315	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0035435	InterPro:IPR003439	EntrezGene:LOC100249647
wikigene:LOC100249647	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43423
PANTHER:PTHR43423:SF1	InterPro:Phosp_transpt1	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC56108	UniParc:UPI0001984372
ArrayExpress:VIT_11s0052g00540	EnsemblPlantsGene:VIT_11s0052g00540	EnsemblPlants:VIT_11s0052g00540.t01	unigene:Vvi.15042	RefSeq:XP_002266816	RefSeq:XP_002266816.1

Description

No Description!

Coordinates

chr11:-:17951090..17953897

Molecular Weight (calculated)

29371.9 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.057

Length

268 amino acids

Sequence
(BLAST)

001: MSSATTPFLD SSPAVEPLIL QVEEEEDGER KPKFRVRNLI KVSESGEAIL RGIDVDVPKG AIVGVIGPSG SGKSTLLRVL NRLWEPPSGT VYLDGTDIRE
101: LDVLGLRRKV GMLFQLPVLF EGTVADNIRY GPQLRGKKLT DNEVLKLLTL ADLDSSFMKK TGGELSVGQA QRVALARTLA NEPEVLLLDE PTSALDPIST
201: QNIEDVIVKL KKSRGMTVVM VSHSIKQIQR IADRVCLLVD GEIIEVLEPD KLSEARHPMA LRFLQLSS

Best Arabidopsis Sequence Match ( AT1G67940.1 )
(BLAST)

001: MPSLWSNESD GSLREHLVDV VVSGSEPKIR VHDLTRVADD GSRILKGVTI DIPKGMIVGV IGPSGSGKST FLRSLNRLWE PPESTVFLDG EDITNVDVIA
101: LRRRVGMLFQ LPVLFQGTVA DNVRYGPNLR GEKLSDEEVY KLLSLADLDA SFAKKTGAEL SVGQAQRVAL ARTLANEPEV LLLDEPTSAL DPISTENIED
201: VIVKLKKQRG ITTVIVSHSI KQIQKVADIV CLVVDGEIVE VLKPSELSHA THPMAQRFLQ LSS

Arabidopsis Description

ABCI17Sensitive to aluminum rhizotoxicity 1 [Source:UniProtKB/TrEMBL;Acc:D6RVY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.