CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068600.2.1	Tomato	cytosol	54.62	76.76
Zm00001d014611_P001	Maize	cytosol, mitochondrion, plasma membrane	50.77	70.21
VIT_11s0052g00540.t01	Wine grape	cytosol	72.31	70.15
Bra004271.1-P	Field mustard	cytosol	70.38	69.32
CDX96058	Canola	cytosol	70.38	69.32
CDY01873	Canola	cytosol	70.0	68.94
AT1G67940.1	Thale cress	cytosol	69.23	68.44
PGSC0003DMT400036875	Potato	cytosol	68.85	68.06
Solyc03g117810.2.1	Tomato	cytosol	68.08	67.3
PGSC0003DMT400074438	Potato	extracellular	69.62	64.64
TraesCS7B01G327900.1	Wheat	cytosol, golgi, mitochondrion	64.23	64.23
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	64.62	63.88
TraesCS7A01G427700.1	Wheat	cytosol	63.85	63.85
EER90300	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	64.23	62.31
TraesCS4B01G315100.1	Wheat	cytosol	61.15	60.46
TraesCS4A01G414400.1	Wheat	cytosol	60.77	60.08
TraesCS4B01G336400.1	Wheat	cytosol, plastid	62.69	57.39
HORVU7Hr1G098490.2	Barley	plastid	63.85	56.85
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	66.92	56.13
TraesCS4D01G332100.1	Wheat	cytosol	61.15	55.59
HORVU4Hr1G079940.5	Barley	cytosol	61.92	51.6
Os06t0695800-01	Rice	unclear	65.38	49.13
Os10t0434900-00	Rice	cytosol, mitochondrion	22.69	44.03
KRG94568	Soybean	mitochondrion	23.46	23.37
KRH40333	Soybean	plastid	26.54	20.0
KRH00900	Soybean	plastid	26.15	17.22
KRH54520	Soybean	plasma membrane, plastid	22.31	7.19
KRH56933	Soybean	plasma membrane, plastid	21.92	6.01
KRH03450	Soybean	plasma membrane, plastid	21.15	5.77
KRH63384	Soybean	plasma membrane	14.62	5.22
KRH63387	Soybean	plasma membrane, plastid	17.69	4.78
KRG88422	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	8.85	4.68
KRH54517	Soybean	plasma membrane	17.31	4.65
KRH66908	Soybean	cytosol	23.08	3.29
KRH63056	Soybean	extracellular, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EntrezGene:100791365	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R4J3Q3	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EMBL:ACUP02004781	EnsemblPlantsGene:GLYMA_08G055000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005315	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0035435	InterPro:IPR003439
EnsemblPlants:KRH41857	ProteinID:KRH41857	ProteinID:KRH41857.1	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR43423	PANTHER:PTHR43423:SF1	InterPro:Phosp_transpt1	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0001B83730	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4238339..4239783

Molecular Weight (calculated)

28313.4 Da

IEP (calculated)

5.679

GRAVY (calculated)

0.013

Length

260 amino acids

Sequence
(BLAST)

001: MSSRLDECLL EVDGYGDGDG KAKPKFLIRN LSRVSEDGVP ILKGINLEIP EGVIVGVIGP SGSGKSTFLR ALNRLWEPPS ASVFLDAQDI CHLDVLSLRR
101: NVAMLFQLPA LFEGSVADNV RYGPQLRGKK LSDDEVRKLL LMADLDASFM DKSGAELSVG QAQRVALART LANSPQVLLL DEPTSALDPI STENIEDALV
201: KLNKNQGMTV IMVSHSIKQI QRIAHIVCLL VDGEIVEVLN PHNLSQANHP MAKRFLQLSS

Best Arabidopsis Sequence Match ( AT1G67940.1 )
(BLAST)

001: MPSLWSNESD GSLREHLVDV VVSGSEPKIR VHDLTRVADD GSRILKGVTI DIPKGMIVGV IGPSGSGKST FLRSLNRLWE PPESTVFLDG EDITNVDVIA
101: LRRRVGMLFQ LPVLFQGTVA DNVRYGPNLR GEKLSDEEVY KLLSLADLDA SFAKKTGAEL SVGQAQRVAL ARTLANEPEV LLLDEPTSAL DPISTENIED
201: VIVKLKKQRG ITTVIVSHSI KQIQKVADIV CLVVDGEIVE VLKPSELSHA THPMAQRFLQ LSS

Arabidopsis Description

ABCI17Sensitive to aluminum rhizotoxicity 1 [Source:UniProtKB/TrEMBL;Acc:D6RVY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.