CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014611_P001	Maize	cytosol, mitochondrion, plasma membrane	67.16	95.74
TraesCS7A01G427700.1	Wheat	cytosol	88.06	90.77
TraesCS7B01G327900.1	Wheat	cytosol, golgi, mitochondrion	86.94	89.62
TraesCS7D01G420100.1	Wheat	cytosol, golgi, mitochondrion	87.69	89.35
HORVU7Hr1G098490.2	Barley	plastid	88.06	80.82
TraesCS4B01G336400.1	Wheat	cytosol, plastid	84.33	79.58
TraesCS4D01G332100.1	Wheat	cytosol	83.21	77.97
Solyc06g068600.2.1	Tomato	cytosol	49.63	71.89
CDY01873	Canola	cytosol	67.91	68.94
Os06t0695800-01	Rice	unclear	88.81	68.79
Bra004271.1-P	Field mustard	cytosol	67.16	68.18
CDX96058	Canola	cytosol	67.16	68.18
AT1G67940.1	Thale cress	cytosol	66.79	68.06
VIT_11s0052g00540.t01	Wine grape	cytosol	65.67	65.67
GSMUA_Achr7P19550_001	Banana	endoplasmic reticulum, extracellular, vacuole	75.0	64.84
Solyc03g117810.2.1	Tomato	cytosol	63.43	64.64
PGSC0003DMT400036875	Potato	cytosol	63.43	64.64
KRH41857	Soybean	plasma membrane	62.31	64.23
Os10t0434900-00	Rice	cytosol, mitochondrion	31.34	62.69
PGSC0003DMT400074438	Potato	extracellular	64.93	62.14
KXG28389	Sorghum	plastid	27.24	26.84
EER96343	Sorghum	plastid	27.99	21.25
OQU84622	Sorghum	cytosol, peroxisome, plasma membrane	23.51	8.85
EES04733	Sorghum	plasma membrane	23.51	6.61
OQU89360	Sorghum	plasma membrane	22.76	6.43
KXG29778	Sorghum	plasma membrane	22.39	6.29
KXG25097	Sorghum	plasma membrane	21.64	6.05
OQU80389	Sorghum	mitochondrion, plasma membrane	23.88	5.98
OQU80391	Sorghum	mitochondrion	20.9	5.98
EES14950	Sorghum	mitochondrion, plasma membrane, plastid	21.27	5.93
EER89983	Sorghum	plastid	20.9	5.87

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8063812	EntrezGene:8065553	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	UniProt:C5Z8T0	EnsemblPlants:EER90300	ProteinID:EER90300	ProteinID:EER90300.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005315	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
GO:GO:0035435	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR43423	PANTHER:PTHR43423:SF1	InterPro:Phosp_transpt1	SMART:SM00382	EnsemblPlantsGene:SORBI_3010G246200	SUPFAM:SSF52540
unigene:Sbi.18645	unigene:Sbi.7157	UniParc:UPI0001A89762	RefSeq:XP_002438933.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:58587672..58591266

Molecular Weight (calculated)

28485.6 Da

IEP (calculated)

6.151

GRAVY (calculated)

0.050

Length

268 amino acids

Sequence
(BLAST)

001: MGSASSDDLR EHLLDVDGGA AAAAAEPKIR VRGLRRRAES ADAATGEEIL RGVHLDVPRG VVMGVIGPSG SGKSTLLRAL NRLWEPAPGA VLLDGADICA
101: IDVLTLRRKV GMLFQTPAMF DGTVADNVRY GPQLRGKKLT EAEVKNLLSL ADLDPALCSK PASELSVGQA QRVALARTLA NDPEVLLLDE PTSALDPIST
201: QNIEEAIVRL KKTRGLTTVI VSHSVKQIQR IADLVCLVVA GEIVEVLAPS ELSDAKHPMA RRFLELSS

Best Arabidopsis Sequence Match ( AT1G67940.1 )
(BLAST)

001: MPSLWSNESD GSLREHLVDV VVSGSEPKIR VHDLTRVADD GSRILKGVTI DIPKGMIVGV IGPSGSGKST FLRSLNRLWE PPESTVFLDG EDITNVDVIA
101: LRRRVGMLFQ LPVLFQGTVA DNVRYGPNLR GEKLSDEEVY KLLSLADLDA SFAKKTGAEL SVGQAQRVAL ARTLANEPEV LLLDEPTSAL DPISTENIED
201: VIVKLKKQRG ITTVIVSHSI KQIQKVADIV CLVVDGEIVE VLKPSELSHA THPMAQRFLQ LSS

Arabidopsis Description

ABCI17Sensitive to aluminum rhizotoxicity 1 [Source:UniProtKB/TrEMBL;Acc:D6RVY5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.