Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 37.34 | 34.7 |
| Solyc10g054860.1.1 | Tomato | nucleus | 31.83 | 29.78 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 28.34 | 28.96 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 28.45 | 28.94 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 28.29 | 28.92 |
| AT4G30150.1 | Thale cress | nucleus | 29.43 | 28.17 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 29.9 | 28.16 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 15.18 | 27.78 |
| KRH15847 | Soybean | cytosol | 0.42 | 6.45 |
| GSMUA_AchrUn_... | Banana | extracellular | 0.52 | 6.33 |
| CDY55339 | Canola | extracellular | 0.36 | 5.74 |
| CDX68631 | Canola | extracellular | 0.36 | 5.38 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 0.31 | 5.31 |
| CDY68304 | Canola | golgi | 0.21 | 3.77 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP15960_001 | EnsemblPlants:GSMUA_AchrUn_randomT15960_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG15960_001 | PANTHER:PTHR15682 | SEG:seg | UniParc:UPI0002956540 |
| UniProt:M0U9K5 | MapMan:35.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15960_001]
Coordinates
chrchrUn_random:-:75552793..75562426
Molecular Weight (calculated)
216510.0 Da
IEP (calculated)
7.069
GRAVY (calculated)
0.035
Length
1923 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANAVPILSE NPGTSKRKRS HVHPPEPQEQ DGGGGGGEAS TELRKKKKIT DQRGAWANLD LILSLQIKDI PIQRKIEIAF DYVSLIGDGD DQGAEVVGIP
0101: RLVSFLIDWI QLHLISFESS KRNAEFCDSC LDYRCWAVLR FCLQKPSVGV SSNLLRAVTR VLHHALLLFD GDSSLLKEES DRLFKHVFEC LSLLLLANSR
0201: AFYNAGVELW VSCAAEAVSL VLKVFMNDEL GSSSGGVLTS LSSLLLEDFV GFLRFHPNPR NVFGAFVDRL LEPLLELLVL LQLRVNEGKC QEAHNLLRIV
0301: KEVLSNGVFH PAHINGLLCL KSSNAEEGRR LKGINESYHR HFFRRLEKMI AEKKAVSLGG FGYLLCLFIN EVRSKKNASL ASKVNNASGR HTEIPEKAEE
0401: TSKPLFGVFT QFLEPLVLEC KRCAELDLSQ DKELLEIRLV EGHCMLKSVN ETLTSFIDEK IYMPTEDTSE ESYFNFLKHI YDIIVYISGK IYLFWLSVLH
0501: VDNVRIKRIL PLLAKEIFVS VGYFLEIEYK AVGNDLVELW LMIFAYLNVQ MPLADTKPCS LLVSGILKLS CQVINIYGEL RQVNSPIFAL CRAVRLFAVA
0601: SDAESTGKSV FVASSPLSAE ICLKSMTALL MSDSFQLAIS NSIKSIPERQ ANGCILQLNT DITNSLEWIK HGSVRNGIFL GETSTLNSCM LHLGMQAELL
0701: GKVLSEIYTI VLDSLTITST NSVLVGNSVD NLMKSIRPSF SCLVQNPLDG VSSSIHYISG RKLSNHELPE HQNESQSIPI SISWFFVFLF RMYTSCRSLY
0801: RQSISLMPPN SAKKASEAIG NIFYVCSGIE WRNNWKSLDD GYFSWIVRPS ISLLDVIQSL SDVFFSNSSP VYAPLVYVFH AMAIQRLNDL DRMLKAYEFL
0901: QEDSQLSQVP LENLDMQKLS KQLNRLIATS RKEAVKVTKF LSGYLPLLAS EGKCICSQSF KTGEVKCLPP DDGTLDENSL PSQIWRFLCQ NINIWCSHAS
1001: NKYLKMFLSH LLLYSLPCGG PVREPCIGET LCNKVDMHQI ALELISDSAL YEQAVLSKHL TSKLCQVLKK SFTFLINHDS TSCKDMYSLS EWSEILTTLI
1101: QGPAVDMGGR HALPTSLSAS NLVHSDISCT IPSGRQSGLS FHMQLKVCED LLYLFCKMPG VHVTATSFVD YATYILNLER LVISNLLTSR ESLVNGDNLF
1201: ELWRLFISCR RAMKHLVVAS VENAEIPEAS YLLTVFNHST ILWLLKTADE LVGLPHAFFG EKYFSQMKTM TFSLVDHTAY IFLTVGKQLM STALQSIINN
1301: EKLHMKLPLH YDKTRKDAYN VIDQHIVTSE NVGPWKYLEL LAEILADQIR DSTVILKDMG HALKEEIDHN ILSLNKLSCV ISCLQGFLWG LASTSDSIGI
1401: DHVTDKQQSQ SLRFNHSCLS RLSNYIVLFE NFVYSCISIF IVDDGQDNET HPTHNLPYNN SLYRNVLIES ASGCSHHHEP FSERSSDSHK KWVINAFRAV
1501: QNVDLSNLQN LRGSFLQNLL EGESPHLAFM VRQLFLASAA ILKLKCTLLF SNSLKPHGNF YYLSSKSMGL LVQTSHIILQ GIAEMVGRPN PFTFVWVDGP
1601: LKYLEVVGNY ISLSDPTLTK DVYAQLLDIH LRVIGKCISL QGKSATLSSH ETGSKTKMLQ RETHVSVHKK QSLVGEYSIN EFKSQLRLSF RKFIGRPVKL
1701: QLRTAVQAIE RALIGTPQGC HMVYEVRTGN FDGGTVSPNV AGGIDCLDMV LEYVSEQKQV IKENISSLLG CLFNIVLHLQ QPKIFYIEKL PYNKTEINPD
1801: SGSVVLMCVE VLTTIAGKHS FQMDTCHASQ CLQIPMVLFR DFSHLKDSHD CSLSTSIPEA GPFHDVHDCN VDRQFSIDLY TSCCKLLYTT LKHRTRYVLL
1901: FWCFYTYEIF WLKLDLKFWN SFH
0101: RLVSFLIDWI QLHLISFESS KRNAEFCDSC LDYRCWAVLR FCLQKPSVGV SSNLLRAVTR VLHHALLLFD GDSSLLKEES DRLFKHVFEC LSLLLLANSR
0201: AFYNAGVELW VSCAAEAVSL VLKVFMNDEL GSSSGGVLTS LSSLLLEDFV GFLRFHPNPR NVFGAFVDRL LEPLLELLVL LQLRVNEGKC QEAHNLLRIV
0301: KEVLSNGVFH PAHINGLLCL KSSNAEEGRR LKGINESYHR HFFRRLEKMI AEKKAVSLGG FGYLLCLFIN EVRSKKNASL ASKVNNASGR HTEIPEKAEE
0401: TSKPLFGVFT QFLEPLVLEC KRCAELDLSQ DKELLEIRLV EGHCMLKSVN ETLTSFIDEK IYMPTEDTSE ESYFNFLKHI YDIIVYISGK IYLFWLSVLH
0501: VDNVRIKRIL PLLAKEIFVS VGYFLEIEYK AVGNDLVELW LMIFAYLNVQ MPLADTKPCS LLVSGILKLS CQVINIYGEL RQVNSPIFAL CRAVRLFAVA
0601: SDAESTGKSV FVASSPLSAE ICLKSMTALL MSDSFQLAIS NSIKSIPERQ ANGCILQLNT DITNSLEWIK HGSVRNGIFL GETSTLNSCM LHLGMQAELL
0701: GKVLSEIYTI VLDSLTITST NSVLVGNSVD NLMKSIRPSF SCLVQNPLDG VSSSIHYISG RKLSNHELPE HQNESQSIPI SISWFFVFLF RMYTSCRSLY
0801: RQSISLMPPN SAKKASEAIG NIFYVCSGIE WRNNWKSLDD GYFSWIVRPS ISLLDVIQSL SDVFFSNSSP VYAPLVYVFH AMAIQRLNDL DRMLKAYEFL
0901: QEDSQLSQVP LENLDMQKLS KQLNRLIATS RKEAVKVTKF LSGYLPLLAS EGKCICSQSF KTGEVKCLPP DDGTLDENSL PSQIWRFLCQ NINIWCSHAS
1001: NKYLKMFLSH LLLYSLPCGG PVREPCIGET LCNKVDMHQI ALELISDSAL YEQAVLSKHL TSKLCQVLKK SFTFLINHDS TSCKDMYSLS EWSEILTTLI
1101: QGPAVDMGGR HALPTSLSAS NLVHSDISCT IPSGRQSGLS FHMQLKVCED LLYLFCKMPG VHVTATSFVD YATYILNLER LVISNLLTSR ESLVNGDNLF
1201: ELWRLFISCR RAMKHLVVAS VENAEIPEAS YLLTVFNHST ILWLLKTADE LVGLPHAFFG EKYFSQMKTM TFSLVDHTAY IFLTVGKQLM STALQSIINN
1301: EKLHMKLPLH YDKTRKDAYN VIDQHIVTSE NVGPWKYLEL LAEILADQIR DSTVILKDMG HALKEEIDHN ILSLNKLSCV ISCLQGFLWG LASTSDSIGI
1401: DHVTDKQQSQ SLRFNHSCLS RLSNYIVLFE NFVYSCISIF IVDDGQDNET HPTHNLPYNN SLYRNVLIES ASGCSHHHEP FSERSSDSHK KWVINAFRAV
1501: QNVDLSNLQN LRGSFLQNLL EGESPHLAFM VRQLFLASAA ILKLKCTLLF SNSLKPHGNF YYLSSKSMGL LVQTSHIILQ GIAEMVGRPN PFTFVWVDGP
1601: LKYLEVVGNY ISLSDPTLTK DVYAQLLDIH LRVIGKCISL QGKSATLSSH ETGSKTKMLQ RETHVSVHKK QSLVGEYSIN EFKSQLRLSF RKFIGRPVKL
1701: QLRTAVQAIE RALIGTPQGC HMVYEVRTGN FDGGTVSPNV AGGIDCLDMV LEYVSEQKQV IKENISSLLG CLFNIVLHLQ QPKIFYIEKL PYNKTEINPD
1801: SGSVVLMCVE VLTTIAGKHS FQMDTCHASQ CLQIPMVLFR DFSHLKDSHD CSLSTSIPEA GPFHDVHDCN VDRQFSIDLY TSCCKLLYTT LKHRTRYVLL
1901: FWCFYTYEIF WLKLDLKFWN SFH
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.