Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 3.67 | 67.26 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.83 | 63.29 |
| CDY68304 | Canola | golgi | 3.04 | 59.43 |
| CDY55339 | Canola | extracellular | 3.24 | 54.92 |
| KRH15847 | Soybean | cytosol | 2.95 | 49.19 |
| CDX68631 | Canola | extracellular | 2.95 | 46.92 |
| Solyc10g054860.1.1 | Tomato | nucleus | 44.13 | 44.43 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 43.02 | 43.58 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 38.42 | 42.06 |
| AT4G30150.1 | Thale cress | nucleus | 40.6 | 41.81 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 37.65 | 41.39 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 37.46 | 41.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.7 | 37.34 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 18.85 | 37.11 |
| TraesCS4D01G258100.1 | Wheat | plastid | 34.36 | 36.63 |
| TraesCS4A01G046600.1 | Wheat | plastid | 34.27 | 36.4 |
| TraesCS4B01G258300.3 | Wheat | plastid | 34.17 | 36.35 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 17.16 | 36.08 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 33.88 | 35.93 |
| HORVU4Hr1G070090.5 | Barley | plastid | 34.12 | 35.86 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 33.2 | 34.4 |
Protein Annotations
| MapMan:35.2 | ProteinID:CCB60664 | ProteinID:CCB60664.1 | ncoils:Coil | UniProt:F6I148 | EMBL:FN596508 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0008150 | GO:GO:0042254 | PFAM:PF10441 |
| PANTHER:PTHR15682 | UniParc:UPI000210973F | InterPro:Urb2/Npa2_C | ArrayExpress:VIT_03s0038g01490 | EnsemblPlantsGene:VIT_03s0038g01490 | EnsemblPlants:VIT_03s0038g01490.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:1025473..1040019
Molecular Weight (calculated)
233690.0 Da
IEP (calculated)
6.655
GRAVY (calculated)
-0.074
Length
2069 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADSDSKPKQ KHTKKKRKLK VPEDDRRPSK TQRFDFLEKE KEKDAKEERP IRRPEEGRPW GNLQLILSLQ NKEILLQEKV QLAYDFVATR ATEEEEDTEQ
0101: GFETVSLSRV IIFLNDWIQS LLISSEKKSK VDLDKTQFQV VGTCLDFRCW EIFKFCLEES LERHVPLNIS RNLLKAIHCI ARNALSQLND ASLHAKESFF
0201: IVEGFELYGT VLSCVSLVFS SHNGLSNENL DLWISTVDAV LELVHKIYTD NIAGGNAGKF VLQFSCLVLE PFSKFLRVHP CRKNGFHDFV DKLLELLLHL
0301: LGVLNLQADG NNPGWTRDLL KLVEEVLSHG LFHPAHIDGF LSLHGKEKHG KEYDGQSEEP KMVVKSYHRH LFDKLEKIVA AKKVLPLSGI GELFHLLVVQ
0401: VKKQKGALVL SEGTKIVGKT IMEPLLFQIK GYLQTKLEVG PALLDVHCTL KSTNKLLASF MHEKVYVQTE DTHEGACLNF LKVVYDRIMS FSVEINQMWL
0501: STVDADKGIH VDTLNLIGKE LIAALGYFLE IDYEVIGNDL VSLWLMMLSF LAIGLSSMDM SDQSSLSSKM VDVGCQLINL YSELRQVNNA IFALCKAVRL
0601: LVSHDSDCEL NYSGFMSCTN SASYEACAKS VEMLLCSQEF KFAIYNAIRS IPEGQASECV RQLTTDISDS LKWMKTSCSV ASGKESGNAK QSGSLLGFDL
0701: QVELLGKGLA EIYTLVLDSL NVTTGNSSLL GVSIEGLMTV MRPGMSSLVA LQLDGVNEFI SAVTERIFYN RVAECKNDFR KLRASTQWIF VLFFRLYMSC
0801: RSLYRQSISL VPPTSAKKMS AVMGDFYIAH TGRDWVEKTD WTEQGYFSWI VQPSASLPNI IQSILDLYPQ DRVVTCSPLV YVLHTMALQR LVDLNRQIKS
0901: FEYLLQSNNK LVQEKLMDDD GLSQCHEKDI KSNKKKSRKW KRFIAVLREE ATGLTDFMMG SVSLVTKKQQ CFSSFDDTTC KDTCAKALHE DDAWDLGVCA
1001: VNEITLPTAI WWVLCQNIDI WCTHAAKKKL KTFLSLLICT SLPHIGSSFG EVKKHNTNEP GYQRKVSVGQ ISMELLSDTT LYEQKFVCRH IASRFCRNLE
1101: KSLSPLLSDA AYRDFDFNSS PNWQEVLSAF DNLSVVVSGA KLPTEFNEEK KAFLLQSMEF TACQSSLNLL CWMPKGYLNS RSFSLYTTCI LNLERFVVCR
1201: LIKCHCALCS HNHYELYRLF LSCRRTLKHL IMAFCEEKME ASQSSLTSIF PEVSFPVLWL LKSVSVMVGL QHTFSEDRAS QFRYMSFSLM DQTSYVFLMF
1301: SKSQFSHVVH FSMNVKKSCA EQLNSDLVHE ESHLTETDPC SDSSKAVDAW KNVVLVAEAL KEQTENLLIS LKDALCNKRV EVGTVDLNRL SSLVSCFQGF
1401: MWGLASAMNH IDVKECDDEM KLLKWKNEPF SKLNLCINVF TDFIDFSLCM FLIEDDQQPE GLGGAQNLSG LDQKNDCSLE PYGGENDISC ANKQQKSKTA
1501: RSSGSLHIDN DSENTGGQEM RLQLDSAVCA TNFLSDVDLF ELRRLNRPLL RSLLKGDNPE AAFFLRELFI ASSAILRLNL QINCIPLSSC FVPIFNGISQ
1601: LLLLELANMA DVPQPISLVW LDGVLKYLEE LGNQFPLTNP TLYRDVYAKL IDLHLKAIGK CISLQGKRAT LASHDAESST KTLDSHVGLS DASLSHGPYC
1701: FDEFKSRLRM SFKVFIKKPS ELHLLSAIQA LERALVGVQE GCMVIYDVNT GSAHGGKVSS ITAAGIDCLD LVLEFVSGRK RLSVVKRHLK SLIAGLFNIV
1801: LHLQSPFIFY RKLIHNKGQT DPDPGSVILM CIEVLTRISG KHALFQMDPC HLQQCLRIPA ALFQSFRGLR LSDAPASYNF FMFSDNQDNG SLESMDSCTV
1901: DRQFTIDLFA ACCRLLNTVL KHHKSECEQC IALLEDSVCV LLRCLETVDA DSVVRKGYFS WEVEEGVKCA CFLRRIYEEM RQQKDVFRQH CFKFLSNYIW
2001: IYSGYGPLKT GIRREIDDAL RPGVYALIDA CSADDLQYLH TVFGEGPCRS TLATLQHDYK LNFQYEGKV
0101: GFETVSLSRV IIFLNDWIQS LLISSEKKSK VDLDKTQFQV VGTCLDFRCW EIFKFCLEES LERHVPLNIS RNLLKAIHCI ARNALSQLND ASLHAKESFF
0201: IVEGFELYGT VLSCVSLVFS SHNGLSNENL DLWISTVDAV LELVHKIYTD NIAGGNAGKF VLQFSCLVLE PFSKFLRVHP CRKNGFHDFV DKLLELLLHL
0301: LGVLNLQADG NNPGWTRDLL KLVEEVLSHG LFHPAHIDGF LSLHGKEKHG KEYDGQSEEP KMVVKSYHRH LFDKLEKIVA AKKVLPLSGI GELFHLLVVQ
0401: VKKQKGALVL SEGTKIVGKT IMEPLLFQIK GYLQTKLEVG PALLDVHCTL KSTNKLLASF MHEKVYVQTE DTHEGACLNF LKVVYDRIMS FSVEINQMWL
0501: STVDADKGIH VDTLNLIGKE LIAALGYFLE IDYEVIGNDL VSLWLMMLSF LAIGLSSMDM SDQSSLSSKM VDVGCQLINL YSELRQVNNA IFALCKAVRL
0601: LVSHDSDCEL NYSGFMSCTN SASYEACAKS VEMLLCSQEF KFAIYNAIRS IPEGQASECV RQLTTDISDS LKWMKTSCSV ASGKESGNAK QSGSLLGFDL
0701: QVELLGKGLA EIYTLVLDSL NVTTGNSSLL GVSIEGLMTV MRPGMSSLVA LQLDGVNEFI SAVTERIFYN RVAECKNDFR KLRASTQWIF VLFFRLYMSC
0801: RSLYRQSISL VPPTSAKKMS AVMGDFYIAH TGRDWVEKTD WTEQGYFSWI VQPSASLPNI IQSILDLYPQ DRVVTCSPLV YVLHTMALQR LVDLNRQIKS
0901: FEYLLQSNNK LVQEKLMDDD GLSQCHEKDI KSNKKKSRKW KRFIAVLREE ATGLTDFMMG SVSLVTKKQQ CFSSFDDTTC KDTCAKALHE DDAWDLGVCA
1001: VNEITLPTAI WWVLCQNIDI WCTHAAKKKL KTFLSLLICT SLPHIGSSFG EVKKHNTNEP GYQRKVSVGQ ISMELLSDTT LYEQKFVCRH IASRFCRNLE
1101: KSLSPLLSDA AYRDFDFNSS PNWQEVLSAF DNLSVVVSGA KLPTEFNEEK KAFLLQSMEF TACQSSLNLL CWMPKGYLNS RSFSLYTTCI LNLERFVVCR
1201: LIKCHCALCS HNHYELYRLF LSCRRTLKHL IMAFCEEKME ASQSSLTSIF PEVSFPVLWL LKSVSVMVGL QHTFSEDRAS QFRYMSFSLM DQTSYVFLMF
1301: SKSQFSHVVH FSMNVKKSCA EQLNSDLVHE ESHLTETDPC SDSSKAVDAW KNVVLVAEAL KEQTENLLIS LKDALCNKRV EVGTVDLNRL SSLVSCFQGF
1401: MWGLASAMNH IDVKECDDEM KLLKWKNEPF SKLNLCINVF TDFIDFSLCM FLIEDDQQPE GLGGAQNLSG LDQKNDCSLE PYGGENDISC ANKQQKSKTA
1501: RSSGSLHIDN DSENTGGQEM RLQLDSAVCA TNFLSDVDLF ELRRLNRPLL RSLLKGDNPE AAFFLRELFI ASSAILRLNL QINCIPLSSC FVPIFNGISQ
1601: LLLLELANMA DVPQPISLVW LDGVLKYLEE LGNQFPLTNP TLYRDVYAKL IDLHLKAIGK CISLQGKRAT LASHDAESST KTLDSHVGLS DASLSHGPYC
1701: FDEFKSRLRM SFKVFIKKPS ELHLLSAIQA LERALVGVQE GCMVIYDVNT GSAHGGKVSS ITAAGIDCLD LVLEFVSGRK RLSVVKRHLK SLIAGLFNIV
1801: LHLQSPFIFY RKLIHNKGQT DPDPGSVILM CIEVLTRISG KHALFQMDPC HLQQCLRIPA ALFQSFRGLR LSDAPASYNF FMFSDNQDNG SLESMDSCTV
1901: DRQFTIDLFA ACCRLLNTVL KHHKSECEQC IALLEDSVCV LLRCLETVDA DSVVRKGYFS WEVEEGVKCA CFLRRIYEEM RQQKDVFRQH CFKFLSNYIW
2001: IYSGYGPLKT GIRREIDDAL RPGVYALIDA CSADDLQYLH TVFGEGPCRS TLATLQHDYK LNFQYEGKV
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKACD QEETVTDIVV EEGPWKNLEL ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.