Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 86.13 | 88.16 |
| TraesCS4B01G258300.3 | Wheat | plastid | 64.7 | 66.43 |
| TraesCS4A01G046600.1 | Wheat | plastid | 64.5 | 66.12 |
| TraesCS4D01G258100.1 | Wheat | plastid | 64.25 | 66.1 |
| HORVU4Hr1G070090.5 | Barley | plastid | 64.8 | 65.72 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 32.15 | 65.24 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.56 | 57.59 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 2.7 | 47.79 |
| CDY68304 | Canola | golgi | 2.3 | 43.4 |
| CDY55339 | Canola | extracellular | 2.55 | 41.8 |
| CDX68631 | Canola | extracellular | 2.4 | 36.92 |
| KRH15847 | Soybean | cytosol | 2.1 | 33.87 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 34.4 | 33.2 |
| Solyc10g054860.1.1 | Tomato | nucleus | 31.25 | 30.36 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 27.84 | 29.54 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 27.69 | 29.4 |
| AT4G30150.1 | Thale cress | nucleus | 29.49 | 29.32 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 27.64 | 29.21 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 29.44 | 28.8 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 13.67 | 25.98 |
Protein Annotations
| EnsemblPlants:Zm00001d028096_P006 | EnsemblPlants:Zm00001d028096_T006 | EnsemblPlantsGene:Zm00001d028096 | EntrezGene:100381737 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 |
| PFAM:PF10441 | ProteinID:ONL94684.1 | ProteinID:ONL94688.1 | ProteinID:ONL94696.1 | SEG:seg | UniParc:UPI000844DA15 |
| UniProt:A0A1D6JRY6 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:22880023..22891698
Molecular Weight (calculated)
223822.0 Da
IEP (calculated)
7.458
GRAVY (calculated)
0.036
Length
1997 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTDAIAMETA AATARPGAAR KRRWNQSQPC QGEGPSDLKF ARLRFDGDGG AKGAWEHLDL VLSLQSKELS LERKIELAVE FLTTLPNNSS CSIQLLRLVS
0101: FIGNWLQSIL NFPENSKKIL HIFDPALDSR CWAILRVCVE KKPSISISLN LLKSLSRVAS HGLGRVDSNT SCPDNESIEL FEQVFDCMSL LFSSNTRAFF
0201: NAGVDLWASC AIEVVNLAQK VSAKKDNFCP VLQKLANCLL GQFACFLRFY ANPKNIFHAF VDKVLGPLLE LLVLLNSQAH SSEHKQTGTM LKIVEDVFSN
0301: GLFHPQHLSG YFGLRSLNKS SAAKDIKGSY HRHLFQRFKG IKTENKAVLL AGFGYLFQLF VRRARNQRTT VAPSRTTLGT LHKSNDGSEE PQHRESLFEV
0401: FIMFMEPIVL ECKSYSQKDF SKLGVTRLVE VHCMLKSINV MLITLIEEKI YVPTEDTLEG SHFNFLQDIY SVLILISEKM YKFWMSAVHL EDVNIKKIVP
0501: LMFAEIISAV GNFLEIEYKV LGDDLVKLWL MIFALSAINT SSKDIEPCFL LASKISSLSA QVICTFSELR QVSRSIFSLC DAVRAFRVEG PDGVHGSFSV
0601: ASLSSQECLG SLTTLLSSET LMGAIRTSIK SMPQGQSSRC IEELTSDLTE TLNWMADCSF EDDVSKLREP SIARKSIFCQ KAELLGRHLS EVYASILDSI
0701: TVTVSNSTLV GKSVERLVNA VRRNFSHLVR NKSKNINGFI SSIMGKNVSK KLHANRQKIP SFSWIFCLFC RLYISCRSLY QQSIGLMPPD VAIDATKLVG
0801: NPFIVCSGKE WTNPTNILGK GYFALIDENS NSLLDVIESL SESLSTNCAS FAPLVYIFHV MVLQRLNDLN RQIKAFQFLL EDDAWQIDNK DIGNTRLLKE
0901: SCSLEAAKLM SFVMNYVKLL SSGETGPFGS YDVSSSWDLS LCSLDEGSFP IATWQLLCEN IDVWSSHVSK KDLKNFFSNL IRFSFTQKRS SLDKENNGTQ
1001: SSGREMTLHS VSIGVLCDTI IYEKKVILKN LASSFCHALK KSFSFVTNSD GDNVFLDTSP DLMETISNLE NEKLIGTGSG ATHAHCLDKH WICEDFLNFF
1101: SAVPGFHANS KAFIRLINYI LHLERQVEKM FTNTYRFHAE VSIKRRLSER AHRARCLARL ALWSKASATA LLLLKLLGLR CESCNPMKLL RLFICCRRAL
1201: INLILKFGKE CPEARQYLSF SNKNGNSYSL VWFLRSVQEI VGSSHKIFDE CTDEVNRLMF SLLDKTSELF STLASLNSSV YLFDLKKQIE SSLDGSPIKK
1301: ETSEHNDQAF DIVEVSALEC VRSMAELLQK TATGIPVTIK DSKCVIKIED CRNTVCWKRL SCSMSCIGGF LQGLNSALES TFNDHPIASP EDRKMLLQYC
1401: SRFSSYVAKF GTFVDICVHV LFMDNKDSAS IDLVSVHLPQ ELDCANGFLN IEAIMDELTK CGSHGVDLSK IQYMENVLLE NLLKGECPLI SFTLREIYSI
1501: SAAIIKFHGY LSFSSDVSRQ TCSPVEQLSL GTMLGIAFIT LQKVADMSSW PHMFCLVWID GVLRYLEVLG SAFTLSELNI SIELYTQIIN ALLRAVGKCI
1601: LLQQKNATLP THEIGSSTKT LQLQNASGYA FPKDFIDTQN RLNSLKSRLR LVLGKFVSIA SNTHLNAALQ VIERALVGVN HCSHSIYQIY TGNPDGGTVS
1701: SDVAAGIDCL YMILDFVPGN KRVFKRTVPG LVGALFNIIL HLQSPHIFYS QNLPPQGSVF HPDAGATVLM CVEVITSFVG RHSFQIDASH VSQCLLVPVT
1801: LFKEFKHLLA KYCNQSVQHH GDHAEYILDR QFSVDIYAAC CKLLCTTLRH QQREIGWCVA LLEDSVSILL GCLESTDSKM INVAGYFAWN MEEALKCASF
1901: FRRIYEEMRQ QRETLGKHAM HFLAGYISMF SGQGPFQTGI TREIDEVLRP GVYSLIDICE ESDFQQLHTY LGEGPCRTTL ADLVRDYKLH FQYQGKI
0101: FIGNWLQSIL NFPENSKKIL HIFDPALDSR CWAILRVCVE KKPSISISLN LLKSLSRVAS HGLGRVDSNT SCPDNESIEL FEQVFDCMSL LFSSNTRAFF
0201: NAGVDLWASC AIEVVNLAQK VSAKKDNFCP VLQKLANCLL GQFACFLRFY ANPKNIFHAF VDKVLGPLLE LLVLLNSQAH SSEHKQTGTM LKIVEDVFSN
0301: GLFHPQHLSG YFGLRSLNKS SAAKDIKGSY HRHLFQRFKG IKTENKAVLL AGFGYLFQLF VRRARNQRTT VAPSRTTLGT LHKSNDGSEE PQHRESLFEV
0401: FIMFMEPIVL ECKSYSQKDF SKLGVTRLVE VHCMLKSINV MLITLIEEKI YVPTEDTLEG SHFNFLQDIY SVLILISEKM YKFWMSAVHL EDVNIKKIVP
0501: LMFAEIISAV GNFLEIEYKV LGDDLVKLWL MIFALSAINT SSKDIEPCFL LASKISSLSA QVICTFSELR QVSRSIFSLC DAVRAFRVEG PDGVHGSFSV
0601: ASLSSQECLG SLTTLLSSET LMGAIRTSIK SMPQGQSSRC IEELTSDLTE TLNWMADCSF EDDVSKLREP SIARKSIFCQ KAELLGRHLS EVYASILDSI
0701: TVTVSNSTLV GKSVERLVNA VRRNFSHLVR NKSKNINGFI SSIMGKNVSK KLHANRQKIP SFSWIFCLFC RLYISCRSLY QQSIGLMPPD VAIDATKLVG
0801: NPFIVCSGKE WTNPTNILGK GYFALIDENS NSLLDVIESL SESLSTNCAS FAPLVYIFHV MVLQRLNDLN RQIKAFQFLL EDDAWQIDNK DIGNTRLLKE
0901: SCSLEAAKLM SFVMNYVKLL SSGETGPFGS YDVSSSWDLS LCSLDEGSFP IATWQLLCEN IDVWSSHVSK KDLKNFFSNL IRFSFTQKRS SLDKENNGTQ
1001: SSGREMTLHS VSIGVLCDTI IYEKKVILKN LASSFCHALK KSFSFVTNSD GDNVFLDTSP DLMETISNLE NEKLIGTGSG ATHAHCLDKH WICEDFLNFF
1101: SAVPGFHANS KAFIRLINYI LHLERQVEKM FTNTYRFHAE VSIKRRLSER AHRARCLARL ALWSKASATA LLLLKLLGLR CESCNPMKLL RLFICCRRAL
1201: INLILKFGKE CPEARQYLSF SNKNGNSYSL VWFLRSVQEI VGSSHKIFDE CTDEVNRLMF SLLDKTSELF STLASLNSSV YLFDLKKQIE SSLDGSPIKK
1301: ETSEHNDQAF DIVEVSALEC VRSMAELLQK TATGIPVTIK DSKCVIKIED CRNTVCWKRL SCSMSCIGGF LQGLNSALES TFNDHPIASP EDRKMLLQYC
1401: SRFSSYVAKF GTFVDICVHV LFMDNKDSAS IDLVSVHLPQ ELDCANGFLN IEAIMDELTK CGSHGVDLSK IQYMENVLLE NLLKGECPLI SFTLREIYSI
1501: SAAIIKFHGY LSFSSDVSRQ TCSPVEQLSL GTMLGIAFIT LQKVADMSSW PHMFCLVWID GVLRYLEVLG SAFTLSELNI SIELYTQIIN ALLRAVGKCI
1601: LLQQKNATLP THEIGSSTKT LQLQNASGYA FPKDFIDTQN RLNSLKSRLR LVLGKFVSIA SNTHLNAALQ VIERALVGVN HCSHSIYQIY TGNPDGGTVS
1701: SDVAAGIDCL YMILDFVPGN KRVFKRTVPG LVGALFNIIL HLQSPHIFYS QNLPPQGSVF HPDAGATVLM CVEVITSFVG RHSFQIDASH VSQCLLVPVT
1801: LFKEFKHLLA KYCNQSVQHH GDHAEYILDR QFSVDIYAAC CKLLCTTLRH QQREIGWCVA LLEDSVSILL GCLESTDSKM INVAGYFAWN MEEALKCASF
1901: FRRIYEEMRQ QRETLGKHAM HFLAGYISMF SGQGPFQTGI TREIDEVLRP GVYSLIDICE ESDFQQLHTY LGEGPCRTTL ADLVRDYKLH FQYQGKI
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.