Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT4G30150.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 97.18 | 97.13 |
| AT4G30150.1 | Thale cress | nucleus | 69.8 | 65.36 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.04 | 48.1 |
| KRH15847 | Soybean | cytosol | 2.98 | 45.16 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 41.2 | 37.46 |
| Solyc10g054860.1.1 | Tomato | nucleus | 36.58 | 33.48 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 33.76 | 31.1 |
| TraesCS4A01G046600.1 | Wheat | plastid | 30.2 | 29.16 |
| HORVU4Hr1G070090.5 | Barley | plastid | 30.41 | 29.05 |
| TraesCS4B01G258300.3 | Wheat | plastid | 29.98 | 29.0 |
| TraesCS4D01G258100.1 | Wheat | plastid | 29.72 | 28.8 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 29.82 | 28.75 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 14.99 | 28.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.92 | 28.29 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 15.52 | 27.78 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 29.4 | 27.69 |
Protein Annotations
| EnsemblPlants:Bra011167.1 | EnsemblPlants:Bra011167.1-P | EnsemblPlantsGene:Bra011167 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 |
| SEG:seg | UniParc:UPI0002546F8A | UniProt:M4D3W3 | MapMan:35.2 | : | : |
Description
AT4G30150 (E=0.0) | EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 31 Blast hits to 27 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 19; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).
Coordinates
chrA01:-:3553635..3560236
Molecular Weight (calculated)
210886.0 Da
IEP (calculated)
6.443
GRAVY (calculated)
-0.047
Length
1881 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRKDTTPPQ KPNPSKKTKK TKKNNPQTQL VDVPVEVVKT KPFDQKKTAS GIVSEEGPWK NLELILSLQN NELSNKEKME LAFSFVEAYT GEKRSDDEDD
0101: EECQAVTISR LVMYLSDWIQ SLFFSKEQNF QVKAEICLDF RCWNILRFCL KQSSILHVSI NSSRYLLKAI GFIAGDLLSS IGDGQGFEAF SSVVDCVELL
0201: FSSKSGLFND NFDLWFSAVE PVLNLTHRVL AENIKDAFVL RFSCLVLEPF STFMVQPTKK NGFQDFVDKL VEPLLSVLGL LIAREDKGYG LETALLKLIQ
0301: EILSLGLFHS SHIDGFLGLG GAERYLPESN VSKTVLKSYH RHFFTKFENM LVMKKEVELS CMGSLFSLFI NRVMKQQRDS NQLATKASKQ QGASTNDNES
0401: SAKSHSSSFI RWESRKSLFD FFLHLMEPIL LKIDGHVESS SDIASLLADF CCLIKSANGL LYHFAHERIY VKTEDASEGA CFCFLKKIFT TIVSVASQLQ
0501: HTYSEGSKMH VLLAKELITA IGYLLQIEYE VIENDLVTLW LTILSFTRFS SFSSENAEDD CSLTSLLIGL GCQLINLYSD LRQVSVAVFA MCKAVRLMIP
0601: SDGDNVEMVD IRELPLLERS AQSVEKLMSC QDLRLAIHRA VKAIPEGQAS DFIKSLTTDV SETSDWIRVS CSASAREQDG QVAAFLAGAL SAIYSLILDS
0701: LTIKTGNSIS VAESMNSLVI LIRPCLTHLV SSGSDCIENF LSAVTGKDLD IIITEKNRET YRKSARLFII FFLRIYMSSR SLSRQLICLM PPKKSKEMAV
0801: IMGDSATARR GSDWVKKKSW NDEGYFSWIC QPSASIVDII KQISDVYLND DSAEDCSLLV YILYGVALQR LVDLNRDIKS LDYVSQISDH QMHGTVLEHV
0901: SVLKSEGEEL TEFLLGNTII PGFSEVGAFE TIDDTDQCLP AVRLGVLSQH IDIWCPHAGK KNMKSFLSQL IGSSVMSNLG LENSVDKGTQ NKKTGLEQSS
1001: LGLLCDSVLY EHEFVRRSLA PSFSHILKMT TEAMFKDFTE EVDSPSDWSE VLVLLESSVA KLQSEAYFEG HVSQLDNRKY TACKNLLNLL CVMPKEYMNK
1101: KSLQLYASFL LDLERFIVFS MLRCLDKLSP GDMQNLFSLF ITCRKTLKSV AMVSCDKVLR STELPLSDIL SLTSWLFKSA QAVVTCQERV RSDFTRKSRD
1201: SLFALMDHTS YMFMTISRDQ FSKALPLFDG QLISTEGSRQ ANRAFESVTE QAETLLDSLR STFRDGRTVF ECKTLILNEL VPIFSSLSGL LWGLASTVSH
1301: RDMQKSHMNA KLKWKSEEFS KLSGIIHVLS NFFEVFAQYL FLSADAQQEI GTSLNWTGLL DGTESSGDMV ESSSDVKKHI IESLMKGDST EVVLALRHLL
1401: IASAAILNLN LQIKGITFSP TFIPVLTDIS FDLLSVLAGT SELPLEFSFI WLDGAAKYLE ELGSHLCLYK RMSNRDHLYS KSIELHLKVI GKCISLQGKE
1501: ATLESHETGF GTNVIHAKKV ESERSRSHQR LHWLEELKVR FRMSFKVLLH NSEESHLKSG LEAIQRALVG VCEVCPAIYS IQTGDRDGGR ISETAAAGID
1601: CLDLVLEHAT GRNRLSEVKG RIQGLVSAVF GIMSHMQSPF IFCTDAVVGK QGPKSPDAGS VTLMCVEVLI RIAGKQALFE MNPSHISQSI HMPGAIFRDY
1701: GNLLRKDDQQ QDLQVDQKFS VSMYAACCRL IYTSVKHHPK KTERSIAALL ESTSALLHCL ETAGNRVGKF ASFEVEEGIT CACFLRRIYE ELRQQKEVFG
1801: HHCFKFLSTY IWISCGYGPL KMGIKREVDE ALRPGVYALV DSCSDQDRQY LHTVFGEGPC RNYLAALKQE SDLNFKYEGK V
0101: EECQAVTISR LVMYLSDWIQ SLFFSKEQNF QVKAEICLDF RCWNILRFCL KQSSILHVSI NSSRYLLKAI GFIAGDLLSS IGDGQGFEAF SSVVDCVELL
0201: FSSKSGLFND NFDLWFSAVE PVLNLTHRVL AENIKDAFVL RFSCLVLEPF STFMVQPTKK NGFQDFVDKL VEPLLSVLGL LIAREDKGYG LETALLKLIQ
0301: EILSLGLFHS SHIDGFLGLG GAERYLPESN VSKTVLKSYH RHFFTKFENM LVMKKEVELS CMGSLFSLFI NRVMKQQRDS NQLATKASKQ QGASTNDNES
0401: SAKSHSSSFI RWESRKSLFD FFLHLMEPIL LKIDGHVESS SDIASLLADF CCLIKSANGL LYHFAHERIY VKTEDASEGA CFCFLKKIFT TIVSVASQLQ
0501: HTYSEGSKMH VLLAKELITA IGYLLQIEYE VIENDLVTLW LTILSFTRFS SFSSENAEDD CSLTSLLIGL GCQLINLYSD LRQVSVAVFA MCKAVRLMIP
0601: SDGDNVEMVD IRELPLLERS AQSVEKLMSC QDLRLAIHRA VKAIPEGQAS DFIKSLTTDV SETSDWIRVS CSASAREQDG QVAAFLAGAL SAIYSLILDS
0701: LTIKTGNSIS VAESMNSLVI LIRPCLTHLV SSGSDCIENF LSAVTGKDLD IIITEKNRET YRKSARLFII FFLRIYMSSR SLSRQLICLM PPKKSKEMAV
0801: IMGDSATARR GSDWVKKKSW NDEGYFSWIC QPSASIVDII KQISDVYLND DSAEDCSLLV YILYGVALQR LVDLNRDIKS LDYVSQISDH QMHGTVLEHV
0901: SVLKSEGEEL TEFLLGNTII PGFSEVGAFE TIDDTDQCLP AVRLGVLSQH IDIWCPHAGK KNMKSFLSQL IGSSVMSNLG LENSVDKGTQ NKKTGLEQSS
1001: LGLLCDSVLY EHEFVRRSLA PSFSHILKMT TEAMFKDFTE EVDSPSDWSE VLVLLESSVA KLQSEAYFEG HVSQLDNRKY TACKNLLNLL CVMPKEYMNK
1101: KSLQLYASFL LDLERFIVFS MLRCLDKLSP GDMQNLFSLF ITCRKTLKSV AMVSCDKVLR STELPLSDIL SLTSWLFKSA QAVVTCQERV RSDFTRKSRD
1201: SLFALMDHTS YMFMTISRDQ FSKALPLFDG QLISTEGSRQ ANRAFESVTE QAETLLDSLR STFRDGRTVF ECKTLILNEL VPIFSSLSGL LWGLASTVSH
1301: RDMQKSHMNA KLKWKSEEFS KLSGIIHVLS NFFEVFAQYL FLSADAQQEI GTSLNWTGLL DGTESSGDMV ESSSDVKKHI IESLMKGDST EVVLALRHLL
1401: IASAAILNLN LQIKGITFSP TFIPVLTDIS FDLLSVLAGT SELPLEFSFI WLDGAAKYLE ELGSHLCLYK RMSNRDHLYS KSIELHLKVI GKCISLQGKE
1501: ATLESHETGF GTNVIHAKKV ESERSRSHQR LHWLEELKVR FRMSFKVLLH NSEESHLKSG LEAIQRALVG VCEVCPAIYS IQTGDRDGGR ISETAAAGID
1601: CLDLVLEHAT GRNRLSEVKG RIQGLVSAVF GIMSHMQSPF IFCTDAVVGK QGPKSPDAGS VTLMCVEVLI RIAGKQALFE MNPSHISQSI HMPGAIFRDY
1701: GNLLRKDDQQ QDLQVDQKFS VSMYAACCRL IYTSVKHHPK KTERSIAALL ESTSALLHCL ETAGNRVGKF ASFEVEEGIT CACFLRRIYE ELRQQKEVFG
1801: HHCFKFLSTY IWISCGYGPL KMGIKREVDE ALRPGVYALV DSCSDQDRQY LHTVFGEGPC RNYLAALKQE SDLNFKYEGK V
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.