Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 97.13 | 97.18 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 91.55 | 91.16 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 4.94 | 82.3 |
| CDY68304 | Canola | golgi | 4.52 | 80.19 |
| CDY55339 | Canola | extracellular | 4.62 | 71.31 |
| AT4G30150.1 | Thale cress | nucleus | 69.61 | 65.21 |
| CDX68631 | Canola | extracellular | 3.67 | 53.08 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.14 | 49.37 |
| KRH15847 | Soybean | cytosol | 2.87 | 43.55 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 41.39 | 37.65 |
| Solyc10g054860.1.1 | Tomato | nucleus | 36.77 | 33.67 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 33.9 | 31.24 |
| TraesCS4A01G046600.1 | Wheat | plastid | 30.23 | 29.21 |
| HORVU4Hr1G070090.5 | Barley | plastid | 30.5 | 29.15 |
| TraesCS4B01G258300.3 | Wheat | plastid | 30.07 | 29.1 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 29.97 | 28.91 |
| TraesCS4D01G258100.1 | Wheat | plastid | 29.81 | 28.9 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 14.98 | 28.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.96 | 28.34 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 15.62 | 27.97 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 29.54 | 27.84 |
Protein Annotations
| EnsemblPlants:CDY28163 | EnsemblPlantsGene:GSBRNA2T00039872001 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 | ProteinID:CDY28163 |
| ProteinID:CDY28163.1 | SEG:seg | UniParc:UPI0004EEEF99 | UniProt:A0A078GU38 | MapMan:35.2 | : |
Description
BnaA01g06860DBnaA01g06860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU38]
Coordinates
chrLK032216:+:13425..20109
Molecular Weight (calculated)
210724.0 Da
IEP (calculated)
6.475
GRAVY (calculated)
-0.029
Length
1882 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRKDTTPPQ KPNPSKKTKK TKKNNPQTQL VDVPVEVVKT KPFDQKKTAS GIVSEEGPWK NLELILSLQN NELSNKEKME LAFSFVEAYA GEKRSDDEDE
0101: EDCQAVTISR LVMYLSDWIQ SLFFSKEQNF QVKAEICLDF RCWNILRFCL KQSSILHVSI NSSRYLLKAI GFIAGDLLSS IGDGQGFEAF SSVVDCVELL
0201: FSSKSGLFND NFDLWFSAVE PVLNLTHRVL AENIKDAFVL RFSCLVLEPF STFMVQPTKK NGFQDFVDKL VEPLLSVLGL LIAREDKGYG LETALLKLIQ
0301: EILSLGLFHS SHIDGFLGLG GAERYLPESK VSKTVLKSYH RHFFTKFENM LVMKKEVELS CMGSLFSLFI NRVMKQQRDS NQLLATKASK QQGASTNDNE
0401: SSAKSHSSSF IRWESRKSLF DFFLHLMEPI LLKIDGHVES SSDIASLLAD FCCLIKSANG LLYHFAHERI YVKTEDASEG ACFCFLKKIF TTIVSVASQL
0501: QHTYSEGSKM HVLLAKELIT AIGYLLQIEY EVIENDLVTL WLTILSFTRF SSFSSENAED DCSLTSLLIG LGCQLINLYS DLRQVSVAVF AMCKAVRLMI
0601: PSDGDNVEMV DIRELPLLER SAQSVEKLMS CQDLRLAIHR AVKAIPEGQA SDFIKSLTTD VSETSDWIRV SCSASAREQD GQVAAFLAGA LSAIYSLILD
0701: SLTIKTGNSI SVAESMNSLV ILIRPCLTHL VSSGSDRIEN FLSTVTGKGL DVIIAEKNRE TYRKSARLFI IFFLRIYMSS RSLSRQLICL MPPKKSKEMA
0801: VIMGDSATAR RGSDWVKKKS WNDEGYFSWI CQPSASIVDI IKQISDVYLN DDSAEDCSLL VYILYGVALQ RLVDLNRDIK SLDYVSQISD HQMHGTVLEH
0901: VSVLKSEGEE LTEFLLGNTI IPGFSEVGAF ETIDDTDQCL PAVRLGILSQ HIDIWCPHAG KKNMKSFLSQ LIGSSVMSKL GLENSVDKGN QNKQTRLEQS
1001: SLVLLCDSVL YEHEFVRRSL APSLSHILKT TAEALFKNFT EEVDSPSDWS EVLVLLESSI AKLQSEAFSE GHVSQLDNRK FTACQNLLNL LCVMPKEYMN
1101: KKSLQLYASF LLDLERCIVF SMLRCLDKLS PGDMQNLFSL FITCRKTLKS IAMVSCDKVL RSTELPLSDI SLLTSWLFKS VQAVVTCQER VRSDFTRKAR
1201: DSLFALMDHT SYMFLTVSRD QFSKALPLFD GQLISTEGSG EANLAFESVT EQAETLLDSL RSTFRDENTV FECKTLILNE LVPIFSSLSG LLWGLASTVS
1301: HRDMQKSHMN AKLKWKSEEF SKLSGIIHVL SKFFEVFAQY LFLSADVQQE IGTSLNWTGL LDGTESSGDM VESSSDVKKQ IIESLIKGDS TEVVLALRHL
1401: LIASAAILNL NLQIKGITFS PSFIPVLTGI SFDLLSVLAG TSELPLEFSF IWLDGAAKYL EELGSHLCLY KRMSNRDHLY SKSIELHLKV IGKCISLQGK
1501: EATLESHETG FGTNVIHAKK VESERSRSHQ RLHWLEELKV RFRMSFKVLL QNSEESHLKS GLEAIERALV GVCEVCPAIY SIQTGDRDGG RISETAAAGI
1601: DCLDLVLEHA TGRNRLSEVK GRIQGLVSAV FGIMSHMQSP FIFCTDAVVG KQGPKSPDAG SVILMCVEVL IRIAGKQALF EMNPSHISQS IHMPGAIFRD
1701: YGNLLRKDDQ QQDLQVDQKF SVSMYAACCR LIYTSVKHHP KKTERSIAAL LESTSALLHC LETAGNRVGK FASFEVKEGI TCACFLRRIY EELRQQKEVF
1801: GHHCFKFLST YIWISCGYGP LKTGIKREVD EALRPGVYAL VDSCTDQDRQ YLHTVFGEGP CRNYLAALKQ ESDLNFKYEG KV
0101: EDCQAVTISR LVMYLSDWIQ SLFFSKEQNF QVKAEICLDF RCWNILRFCL KQSSILHVSI NSSRYLLKAI GFIAGDLLSS IGDGQGFEAF SSVVDCVELL
0201: FSSKSGLFND NFDLWFSAVE PVLNLTHRVL AENIKDAFVL RFSCLVLEPF STFMVQPTKK NGFQDFVDKL VEPLLSVLGL LIAREDKGYG LETALLKLIQ
0301: EILSLGLFHS SHIDGFLGLG GAERYLPESK VSKTVLKSYH RHFFTKFENM LVMKKEVELS CMGSLFSLFI NRVMKQQRDS NQLLATKASK QQGASTNDNE
0401: SSAKSHSSSF IRWESRKSLF DFFLHLMEPI LLKIDGHVES SSDIASLLAD FCCLIKSANG LLYHFAHERI YVKTEDASEG ACFCFLKKIF TTIVSVASQL
0501: QHTYSEGSKM HVLLAKELIT AIGYLLQIEY EVIENDLVTL WLTILSFTRF SSFSSENAED DCSLTSLLIG LGCQLINLYS DLRQVSVAVF AMCKAVRLMI
0601: PSDGDNVEMV DIRELPLLER SAQSVEKLMS CQDLRLAIHR AVKAIPEGQA SDFIKSLTTD VSETSDWIRV SCSASAREQD GQVAAFLAGA LSAIYSLILD
0701: SLTIKTGNSI SVAESMNSLV ILIRPCLTHL VSSGSDRIEN FLSTVTGKGL DVIIAEKNRE TYRKSARLFI IFFLRIYMSS RSLSRQLICL MPPKKSKEMA
0801: VIMGDSATAR RGSDWVKKKS WNDEGYFSWI CQPSASIVDI IKQISDVYLN DDSAEDCSLL VYILYGVALQ RLVDLNRDIK SLDYVSQISD HQMHGTVLEH
0901: VSVLKSEGEE LTEFLLGNTI IPGFSEVGAF ETIDDTDQCL PAVRLGILSQ HIDIWCPHAG KKNMKSFLSQ LIGSSVMSKL GLENSVDKGN QNKQTRLEQS
1001: SLVLLCDSVL YEHEFVRRSL APSLSHILKT TAEALFKNFT EEVDSPSDWS EVLVLLESSI AKLQSEAFSE GHVSQLDNRK FTACQNLLNL LCVMPKEYMN
1101: KKSLQLYASF LLDLERCIVF SMLRCLDKLS PGDMQNLFSL FITCRKTLKS IAMVSCDKVL RSTELPLSDI SLLTSWLFKS VQAVVTCQER VRSDFTRKAR
1201: DSLFALMDHT SYMFLTVSRD QFSKALPLFD GQLISTEGSG EANLAFESVT EQAETLLDSL RSTFRDENTV FECKTLILNE LVPIFSSLSG LLWGLASTVS
1301: HRDMQKSHMN AKLKWKSEEF SKLSGIIHVL SKFFEVFAQY LFLSADVQQE IGTSLNWTGL LDGTESSGDM VESSSDVKKQ IIESLIKGDS TEVVLALRHL
1401: LIASAAILNL NLQIKGITFS PSFIPVLTGI SFDLLSVLAG TSELPLEFSF IWLDGAAKYL EELGSHLCLY KRMSNRDHLY SKSIELHLKV IGKCISLQGK
1501: EATLESHETG FGTNVIHAKK VESERSRSHQ RLHWLEELKV RFRMSFKVLL QNSEESHLKS GLEAIERALV GVCEVCPAIY SIQTGDRDGG RISETAAAGI
1601: DCLDLVLEHA TGRNRLSEVK GRIQGLVSAV FGIMSHMQSP FIFCTDAVVG KQGPKSPDAG SVILMCVEVL IRIAGKQALF EMNPSHISQS IHMPGAIFRD
1701: YGNLLRKDDQ QQDLQVDQKF SVSMYAACCR LIYTSVKHHP KKTERSIAAL LESTSALLHC LETAGNRVGK FASFEVKEGI TCACFLRRIY EELRQQKEVF
1801: GHHCFKFLST YIWISCGYGP LKTGIKREVD EALRPGVYAL VDSCTDQDRQ YLHTVFGEGP CRNYLAALKQ ESDLNFKYEG KV
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.