Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 77.36 | 72.57 |
| CDY55339 | Canola | extracellular | 82.08 | 71.31 |
| CDX68631 | Canola | extracellular | 49.06 | 40.0 |
| KRH15847 | Soybean | cytosol | 40.57 | 34.68 |
| GSMUA_AchrUn_... | Banana | extracellular | 43.4 | 29.11 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 43.4 | 4.67 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 80.19 | 4.52 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 80.19 | 4.5 |
| AT4G30150.1 | Thale cress | nucleus | 66.98 | 3.53 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 59.43 | 3.04 |
| Solyc10g054860.1.1 | Tomato | nucleus | 54.72 | 2.82 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 50.0 | 2.6 |
| TraesCS4B01G258300.3 | Wheat | plastid | 44.34 | 2.42 |
| TraesCS4A01G046600.1 | Wheat | plastid | 44.34 | 2.41 |
| HORVU4Hr1G070090.5 | Barley | plastid | 44.34 | 2.39 |
| TraesCS4D01G258100.1 | Wheat | plastid | 42.45 | 2.32 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 42.45 | 2.31 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 43.4 | 2.3 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 2.83 | 0.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 3.77 | 0.21 |
Protein Annotations
| EnsemblPlants:CDY68304 | EnsemblPlantsGene:GSBRNA2T00072808001 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 | ProteinID:CDY68304 |
| ProteinID:CDY68304.1 | TMHMM:TMhelix | UniParc:UPI0004EE6935 | UniProt:A0A078JNH1 | MapMan:35.2 | : |
Description
BnaCnng58430DBnaCnng58430D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JNH1]
Coordinates
chrLK037142:-:1022..1620
Molecular Weight (calculated)
12545.4 Da
IEP (calculated)
9.784
GRAVY (calculated)
-0.484
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: TELQLRQQKK YVFGHHCFKF LSIYIWISCG YGPLKMGIKR EVDETLRPGV YALVDSCSDQ DRQYLHTVFG EGPCRNYLAA LKQESDLNFK YMKERFRKIK
101: MGKVRV
101: MGKVRV
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKACD QEETVTDIVV EEGPWKNLEL ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.