Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os10t0114400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | Os10t0114400-01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | extracellular | 9.55 | 59.49 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 5.39 | 46.9 |
| CDY68304 | Canola | golgi | 4.67 | 43.4 |
| CDY55339 | Canola | extracellular | 4.67 | 37.7 |
| KRH15847 | Soybean | cytosol | 4.47 | 35.48 |
| TraesCS4B01G258300.3 | Wheat | plastid | 70.02 | 35.42 |
| CDX68631 | Canola | extracellular | 4.67 | 35.38 |
| TraesCS4A01G046600.1 | Wheat | plastid | 69.51 | 35.11 |
| TraesCS4D01G258100.1 | Wheat | plastid | 69.11 | 35.03 |
| HORVU4Hr1G070090.5 | Barley | plastid | 69.31 | 34.64 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 66.46 | 33.52 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 65.24 | 32.15 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 36.08 | 17.16 |
| Solyc10g054860.1.1 | Tomato | nucleus | 32.32 | 15.47 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 29.27 | 15.24 |
| AT4G30150.1 | Thale cress | nucleus | 30.89 | 15.13 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 28.66 | 14.99 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 28.66 | 14.98 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 28.86 | 13.91 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 8.74 | 8.18 |
Protein Annotations
| EnsemblPlants:Os03t0203100-01 | EnsemblPlantsGene:Os03g0203100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0008150 | GO:GO:0042254 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 |
| ProteinID:BAS82840.1 | SEG:seg | UniParc:UPI0003938689 | UniProt:A0A0P0VUE9 | MapMan:35.2 | : |
Description
Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal domain containing protein. (Os03t0203100-01)
Coordinates
chr3:+:5400960..5406847
Molecular Weight (calculated)
110900.0 Da
IEP (calculated)
6.751
GRAVY (calculated)
0.028
Length
984 amino acids
Sequence
(BLAST)
(BLAST)
001: VEKRSCKDVE NSGSQSSHRE ITLCNVSVQL LCDTIIYDRK VLLKNLVSGF CHALKKSVLS FVTDANEDND LLDSPPDLVD ILTKLENEKF FSTNSDVTHT
101: NGIDKLWICE NLLNFFSTVP GFHANSKSLL QLIAYILHLE RLLLLAMVCH RYESCNSMGL LRLFVCCRRA MKNLIFNFGK EFPELKQYSA FSKIFGGSCL
201: IWLLRSVQEL VSLSHKIFEE HTDEMKNTIF SLVDKTSEIF STLTNMNSVF YLLGAKKQII SSSGESSTPK HDDQAFSILE NSALEHVKIM AELLEKSTTG
301: IPVTVKGSQC VIKLENCYDT VCWDRLLCTM SCIRGFLWGL ISALEGTCKD YLSSPEERNV MFQYASRFSG CVAKFEAFVD ICMHVLFMET KDCELADLIS
401: VHLPQELDCE NNSLNITAIM DEWTRHQPEE IGFHSDGVLN ISTETRGFDL PKVQFVKGFL LENLLSGEGP SIAFTLRELY NASAAIVKLK GILSFPSEVC
501: RQICSPFQKL PLGPMVATAY IALHKLADMS NWPDMFSLLW IDGILSYLEA VGNILALPEI NMSKELYTQV VNAHLRAIGK CILLQGKNAT LPTHEIGSST
601: KTLYLQNRSG HVVAKGIINR QNRLNSLKSR LRLSLGKYVN VSSNMHLNTA VQVIERALVG VNRFSHSIYE INTGNCDGGT VSSDVAAGIY CLYLVLETVP
701: GNKRVFKRTV PGLIGALFNI VLHLESPFIF YTERMPVHYP YLHPDAGAIV LMCIEVITAF VGRHSFQIDS CHVSQCLHVP MTLFKGFKHL LSCRNMPHSC
801: NQSEEQLAAS NEYILDRQFS VDMYASCCKL LCTTIRHQQR EVARCVAVLE DSVNILLSCL ESPNPKMVSR AGYFSWNMEE SMKCASFFRR IYEEMRQQRE
901: LLGKHSMYFL AGYISMYSGQ GPFQTGITRE IDEALRPGVY SLIDICEESD LQLLHTYLGE GPCRTTFANL VQDYKLHFQY QGKI
101: NGIDKLWICE NLLNFFSTVP GFHANSKSLL QLIAYILHLE RLLLLAMVCH RYESCNSMGL LRLFVCCRRA MKNLIFNFGK EFPELKQYSA FSKIFGGSCL
201: IWLLRSVQEL VSLSHKIFEE HTDEMKNTIF SLVDKTSEIF STLTNMNSVF YLLGAKKQII SSSGESSTPK HDDQAFSILE NSALEHVKIM AELLEKSTTG
301: IPVTVKGSQC VIKLENCYDT VCWDRLLCTM SCIRGFLWGL ISALEGTCKD YLSSPEERNV MFQYASRFSG CVAKFEAFVD ICMHVLFMET KDCELADLIS
401: VHLPQELDCE NNSLNITAIM DEWTRHQPEE IGFHSDGVLN ISTETRGFDL PKVQFVKGFL LENLLSGEGP SIAFTLRELY NASAAIVKLK GILSFPSEVC
501: RQICSPFQKL PLGPMVATAY IALHKLADMS NWPDMFSLLW IDGILSYLEA VGNILALPEI NMSKELYTQV VNAHLRAIGK CILLQGKNAT LPTHEIGSST
601: KTLYLQNRSG HVVAKGIINR QNRLNSLKSR LRLSLGKYVN VSSNMHLNTA VQVIERALVG VNRFSHSIYE INTGNCDGGT VSSDVAAGIY CLYLVLETVP
701: GNKRVFKRTV PGLIGALFNI VLHLESPFIF YTERMPVHYP YLHPDAGAIV LMCIEVITAF VGRHSFQIDS CHVSQCLHVP MTLFKGFKHL LSCRNMPHSC
801: NQSEEQLAAS NEYILDRQFS VDMYASCCKL LCTTIRHQQR EVARCVAVLE DSVNILLSCL ESPNPKMVSR AGYFSWNMEE SMKCASFFRR IYEEMRQQRE
901: LLGKHSMYFL AGYISMYSGQ GPFQTGITRE IDEALRPGVY SLIDICEESD LQLLHTYLGE GPCRTTFANL VQDYKLHFQY QGKI
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.