Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- peroxisome 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G046600.1 | Wheat | plastid | 97.28 | 97.13 |
| TraesCS4D01G258100.1 | Wheat | plastid | 96.66 | 96.86 |
| HORVU4Hr1G070090.5 | Barley | plastid | 94.45 | 93.3 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 35.42 | 70.02 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 67.51 | 67.3 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 66.43 | 64.7 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.99 | 61.39 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 2.78 | 47.79 |
| CDY68304 | Canola | golgi | 2.42 | 44.34 |
| CDY55339 | Canola | extracellular | 2.62 | 41.8 |
| CDX68631 | Canola | extracellular | 2.57 | 38.46 |
| KRH15847 | Soybean | cytosol | 2.21 | 34.68 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 36.35 | 34.17 |
| Solyc10g054860.1.1 | Tomato | nucleus | 32.8 | 31.05 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 29.1 | 30.07 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 29.0 | 29.98 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 29.0 | 29.84 |
| AT4G30150.1 | Thale cress | nucleus | 30.64 | 29.67 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 29.97 | 28.55 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 14.04 | 25.98 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G258300.3 | EnsemblPlantsGene:TraesCS4B01G258300 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:524889024..524898224
Molecular Weight (calculated)
218328.0 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.018
Length
1945 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAMAMESAAP SPRGASRKRP RSQTPPPAGE GPSEPALARP RFAENLDLVL SLQSKELSLQ RKVELAFNFI KAESNSSSHG HRVDNIQLLR MVSFIGNWVQ
0101: SILSKKVPEP FDPVLDYRCW EILRFCIEKK PSVSISLKLL QPLGCIAKDG LSRVQIGASC DDHVSFLLFE RVFDCVSFLF SSNTRAFFNA PVDLWTSCVT
0201: EAINLIQKVS TNEKKGCTIL QNLGNCLLEQ FSSFLRFHAN PKNIFRPFLD KILDPLLELL VLLNSQANSI KHKQPGSTLK IAEEILSNGL FHPQHLSGYF
0301: GLKNLNKGIV KDVKGSYHRH LFERFKGIKA ESKAVLLSGF GYLLQLFVTR ARNQRTSLAP RGTSFKSPQK TSEGSEEPQQ QGESIFEVFM QFMEPLVLEC
0401: KSYSQKDFSD LGVTKLVEVH CMLKSINEML ATVTEEKIYV PTEDTLEGSY LQFLQEIYRV LILMAEKMYD FWVSALHLED TNVKKMLPLM FVEIVVAVGH
0501: FLEIEYKVMG SDLVKLWSMI FALSAINASS KDIKPCLLLT SKISSLSSQV IRTFSELRQV AHAICTLCNT VRTFRAVAGP DAVPGPFSVA SLSSHKCFES
0601: LATLLSSQTL RDAICTSINS MPEGQSSRCI EELTVDLTQT LKWMKSCDEF VDLETQGEPR LMSRKSVFHQ RAELFGRYLS ELYTSVLDSI TVTASNTTLV
0701: AKSVERLVNT IRPNLSQLMR NESINPSEFI SSVVGKNLSN KQCANWQKIP SLSWFFAFFF RIYTSCRSLY LQSVGLMPPN LAIEATELVG NSFIVCCGKE
0801: WTNTSNIVAE GYFAWIVESA GSLWEVTEIL SQSLPRNHSG FTTLFYTLHL MALQRLEDLN RQINAFDFLL EDGTQQFDTE DRGNTELLKD PCCLEAARLT
0901: SFMMNYVRTL SSGGTDRISS WDMSICSLDE DSFHIATWRL LCENIDIWSS HASKKDLKNF FSNLIKFSFV QKRSCRDEES SVCQDSCREI TLHTISVELL
1001: CDTIIYDQKV LLKNLVSCFC GALKKSISSF ITGADEDNAL LNISPDLMEI LNKLNNEKLV RTYPDSTHAH GVDKYRICEN LLNFCSTVPG FHSNSKSFLQ
1101: LITYILHLER LLLLTLLSRH YESCNPIELI RLFICCRRAM QNLVSKFGKE YPESKQYSTF SELLGNSYSL IWLLRSVQEI IGLSHEIFGE HTDQKKNTLF
1201: SLVDKTSEIF STLANMNSKF CLLGPKKQIG SSLKHTASES DTSKHDGQAF DTLENSALEH VKTMAEQLEK TTAGIPVTTK DCKCVIKIEN SYDNVCWDKL
1301: LCTMSCIGGF LWGLVSAFES TIKDYPTASS EERKLMLHYA SNFSRSIGKF ESFVDICLHV LFMENKDFGS VDLISGRLPQ ELDCENGFLN IEVVMDVWTM
1401: HQLKDNKLQS DGPPGMKGSL LENLLNGEGP FVAFTLRELY SVSAAIVKLK GLISFSGDVC RKACNPFQHL SLNPMVGTAC IALQKIADMS DWPDMFSLVW
1501: IDGILRYLEV LGTFPELNLS KELYAQIVNA HVSAIGKCIL LQGKSATLPT HEIGSSTKTL QLQNTSGYVV TKNIIDRQNR LNSLISRLRL SMRNFVSVAS
1601: NMHLSATLQV IERALVGVNQ YSHSIYEVET GTSDGGTVSS DVAAGIDCLY LVLGSVPGNK RVFQRTVLSL VGALFNIVLH LESPLIFYIE KLPPLCPDLH
1701: PDAGAIVLMC VEVITSFAGR HTFQIDACHV SQCLHLPVML FKGFKHLLAD RSVSCSSENI HEQIAGQPLA SKEYLLDRQF SVDMYAACCK LLCTVLRHQQ
1801: SEVGQCVAVL EDSVNILLSC LESADSKMVS MAGCFTWNKE EALKCASFFR RIYEEMRQQK TIMEHHSMHF LAGYISMFSG LGPFQTGITR EIDEALRPGV
1901: YSLIDICQES DFQQLHTYLG EGPCRTTLAN LVHDYKLHFQ YQGKI
0101: SILSKKVPEP FDPVLDYRCW EILRFCIEKK PSVSISLKLL QPLGCIAKDG LSRVQIGASC DDHVSFLLFE RVFDCVSFLF SSNTRAFFNA PVDLWTSCVT
0201: EAINLIQKVS TNEKKGCTIL QNLGNCLLEQ FSSFLRFHAN PKNIFRPFLD KILDPLLELL VLLNSQANSI KHKQPGSTLK IAEEILSNGL FHPQHLSGYF
0301: GLKNLNKGIV KDVKGSYHRH LFERFKGIKA ESKAVLLSGF GYLLQLFVTR ARNQRTSLAP RGTSFKSPQK TSEGSEEPQQ QGESIFEVFM QFMEPLVLEC
0401: KSYSQKDFSD LGVTKLVEVH CMLKSINEML ATVTEEKIYV PTEDTLEGSY LQFLQEIYRV LILMAEKMYD FWVSALHLED TNVKKMLPLM FVEIVVAVGH
0501: FLEIEYKVMG SDLVKLWSMI FALSAINASS KDIKPCLLLT SKISSLSSQV IRTFSELRQV AHAICTLCNT VRTFRAVAGP DAVPGPFSVA SLSSHKCFES
0601: LATLLSSQTL RDAICTSINS MPEGQSSRCI EELTVDLTQT LKWMKSCDEF VDLETQGEPR LMSRKSVFHQ RAELFGRYLS ELYTSVLDSI TVTASNTTLV
0701: AKSVERLVNT IRPNLSQLMR NESINPSEFI SSVVGKNLSN KQCANWQKIP SLSWFFAFFF RIYTSCRSLY LQSVGLMPPN LAIEATELVG NSFIVCCGKE
0801: WTNTSNIVAE GYFAWIVESA GSLWEVTEIL SQSLPRNHSG FTTLFYTLHL MALQRLEDLN RQINAFDFLL EDGTQQFDTE DRGNTELLKD PCCLEAARLT
0901: SFMMNYVRTL SSGGTDRISS WDMSICSLDE DSFHIATWRL LCENIDIWSS HASKKDLKNF FSNLIKFSFV QKRSCRDEES SVCQDSCREI TLHTISVELL
1001: CDTIIYDQKV LLKNLVSCFC GALKKSISSF ITGADEDNAL LNISPDLMEI LNKLNNEKLV RTYPDSTHAH GVDKYRICEN LLNFCSTVPG FHSNSKSFLQ
1101: LITYILHLER LLLLTLLSRH YESCNPIELI RLFICCRRAM QNLVSKFGKE YPESKQYSTF SELLGNSYSL IWLLRSVQEI IGLSHEIFGE HTDQKKNTLF
1201: SLVDKTSEIF STLANMNSKF CLLGPKKQIG SSLKHTASES DTSKHDGQAF DTLENSALEH VKTMAEQLEK TTAGIPVTTK DCKCVIKIEN SYDNVCWDKL
1301: LCTMSCIGGF LWGLVSAFES TIKDYPTASS EERKLMLHYA SNFSRSIGKF ESFVDICLHV LFMENKDFGS VDLISGRLPQ ELDCENGFLN IEVVMDVWTM
1401: HQLKDNKLQS DGPPGMKGSL LENLLNGEGP FVAFTLRELY SVSAAIVKLK GLISFSGDVC RKACNPFQHL SLNPMVGTAC IALQKIADMS DWPDMFSLVW
1501: IDGILRYLEV LGTFPELNLS KELYAQIVNA HVSAIGKCIL LQGKSATLPT HEIGSSTKTL QLQNTSGYVV TKNIIDRQNR LNSLISRLRL SMRNFVSVAS
1601: NMHLSATLQV IERALVGVNQ YSHSIYEVET GTSDGGTVSS DVAAGIDCLY LVLGSVPGNK RVFQRTVLSL VGALFNIVLH LESPLIFYIE KLPPLCPDLH
1701: PDAGAIVLMC VEVITSFAGR HTFQIDACHV SQCLHLPVML FKGFKHLLAD RSVSCSSENI HEQIAGQPLA SKEYLLDRQF SVDMYAACCK LLCTVLRHQQ
1801: SEVGQCVAVL EDSVNILLSC LESADSKMVS MAGCFTWNKE EALKCASFFR RIYEEMRQQK TIMEHHSMHF LAGYISMFSG LGPFQTGITR EIDEALRPGV
1901: YSLIDICQES DFQQLHTYLG EGPCRTTLAN LVHDYKLHFQ YQGKI
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKACD QEETVTDIVV EEGPWKNLEL ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.