Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G046600.1 | Wheat | plastid | 97.32 | 96.97 |
| TraesCS4B01G258300.3 | Wheat | plastid | 96.86 | 96.66 |
| HORVU4Hr1G070090.5 | Barley | plastid | 94.02 | 92.69 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 35.03 | 69.11 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 67.18 | 66.84 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 66.1 | 64.25 |
| GSMUA_AchrUn_... | Banana | extracellular | 5.0 | 61.39 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 2.73 | 46.9 |
| CDY68304 | Canola | golgi | 2.32 | 42.45 |
| CDY55339 | Canola | extracellular | 2.52 | 40.16 |
| CDX68631 | Canola | extracellular | 2.52 | 37.69 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 36.63 | 34.36 |
| KRH15847 | Soybean | cytosol | 2.16 | 33.87 |
| Solyc10g054860.1.1 | Tomato | nucleus | 32.97 | 31.14 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 28.9 | 29.81 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 28.8 | 29.72 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 28.85 | 29.63 |
| AT4G30150.1 | Thale cress | nucleus | 30.6 | 29.57 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 30.24 | 28.75 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 14.27 | 26.36 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G258100.1 | EnsemblPlantsGene:TraesCS4D01G258100 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:428383280..428392679
Molecular Weight (calculated)
217952.0 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.020
Length
1941 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAMATDSAAS SPRGASRKRP RSQSPAPAGE GPSEPALARP RFAENLDLVL SLQGKELSLQ RKVELAFNFI KAESNRSSHG HRADSIQLSR MVSFIGNWVQ
0101: SILILSKKIP EPFDPVLDYR CWEILRFCIE KKPSVSISLK LLQPLGCIAK DGLSRVQIGA SCDDHESLLL FERVFDCVSF LFSSNTRAFF NAPVDLWTSC
0201: VTEAINLVQK VSTNEKKGCT ILQNLGNCLL EQFSSFLRFH ANPKNIFRPF VDKILDPLLE LLVLLNSQAN SIKHKHAGST LKIAEEILSN GLFHPQHLSG
0301: YFGLKNLNKG IVKDVKGSYH RHLFERLKGI KAESKAVLLA GFGYLLQLFV TRARNQRTSL APRGTSFKSP QKTSEGSEEP QQQGESIFEV FMQFMEPLVL
0401: ECKSYSQKDF SDLGVTKLVE VHCMLKSINE MLATVTEEKI YVPTEDTSEG SYLQFLQEIY RVLILIAEKM YDFWVSALHL EDTNVKKMLP LMFVEIVVAV
0501: GHFLEIEYKV MGSDLVKLWS MIFALSAINA SSKDIKPCLL LTSKISSLSS QVIRTFSELR QVAHSICTLC NTVRTFRAVA GPDAVPGPFP VASLSSHKCF
0601: ESLATLLSSQ TLRDAICTSI NSMPEGQSSR CIEELTVDLT ETLKWMKSCD DFVDLETQGE PRLMSRKSVF HQRAELFGRY LSELYTSVLD SITVTASNTT
0701: LVAKSVERLV NTIRPNLSQL MRNESINPSE FISSVVGKNL SNKQCANWQK IPSLSWFFAF FFRIYTSCRS LYLQSVGLMP PNLAIEATEL VGNSFIVCCG
0801: KEWTNTSNII AEGYFAWIVE SAGSLWEVIE ILSQSLPRNH SGFTTLFYTL HVMALQRLED LNRQINAFDF LLEDGTQQFD TEDREKTELL KDPCCLEATR
0901: LTSFMMNYVR TLSSGGTNRI SSWDMSICSL DEDSFHIATW RLLCENIDIW SSHASKKDLK NFFSNLIKFS FVQKRSCKDE EGSDCQDSCR EITLHTISVE
1001: LLCDTIIYDQ KVLLKNLVSC FCGALKKSIS SFMTRADEDN ALLNISPDMM EILNKLNNEK LVCTYPDSTH AHGVDKYRIC ENLLNFCSTV PGFHSNSKSF
1101: LQLITYILHL ERLLLLTLLN HHYESCNPIE LIRLFICCRR AMQNLVLKFG KEYPDSKQYS TFSELLGNSY SLIWLLRSVQ EIIGLSHEIF GEHTDQKKNT
1201: LFSLVDKTSE IFSTLANMNS KFCLLGPKKQ IGSSLKHTAS ESDTSEHDAL ENSALEHVKT MAEQLEKTTA GIPVTTKDCK CVIKIENSYD NVCWDKLLCT
1301: MSCIGGFLWG LVSAFESTIK DYPTASSEER KLMLHYASNF SRSIAKFETF VDICLHVLFM ENKDFGSVDL ISGRLPQELD CENGFLNIEV VMDGWTMHQL
1401: KDNKLQSDGP PGMKRSLLEN LLNGEGPFVA FTLRELYSVS AAIVKLKGLI SFSGNVCRKA CNPFQHLSLN PMVGTACIAL QKIADMSDWP DMFSLVWIDG
1501: ILRYLEVLGT FPGLNLSKEL YAQIVNAHVS AIGKCILLQG KSATLPTHEI GSSTKILQLQ NTSGYVVTKN IIDRQNRLNS LISRLRLSMR NFVSVASNMH
1601: LSATLQVIER ALVGVNQYSH SIYEVETGTS DGGTVSSDVA AGIDCLYLVL GSVPGNKRVF QRTVPSLVGA LFNIVLHLQS PLIFYIEKLP PLCPDLHPEA
1701: GAIVLMCVEV ITSFVGRHTF QIDACHVSQC LHLPVMLFKG FKHLLADRSV SCSSENIREQ IAGQPLASKE YLLDRQFSVD MYAACCKLLC TVLRHQQSEV
1801: GQCVAVLEDS VNILLSCLES ADSKMVSMAG CFTWNKEEAL KCASFFRRIY EEMRQQKTIM EHHSMHFLAG YISMFSGLGP FQTGITREID EALRPGVYSL
1901: IDICQESDFQ QLHTYLEGPC RTTLANLVHD YKLHFQYQGK I
0101: SILILSKKIP EPFDPVLDYR CWEILRFCIE KKPSVSISLK LLQPLGCIAK DGLSRVQIGA SCDDHESLLL FERVFDCVSF LFSSNTRAFF NAPVDLWTSC
0201: VTEAINLVQK VSTNEKKGCT ILQNLGNCLL EQFSSFLRFH ANPKNIFRPF VDKILDPLLE LLVLLNSQAN SIKHKHAGST LKIAEEILSN GLFHPQHLSG
0301: YFGLKNLNKG IVKDVKGSYH RHLFERLKGI KAESKAVLLA GFGYLLQLFV TRARNQRTSL APRGTSFKSP QKTSEGSEEP QQQGESIFEV FMQFMEPLVL
0401: ECKSYSQKDF SDLGVTKLVE VHCMLKSINE MLATVTEEKI YVPTEDTSEG SYLQFLQEIY RVLILIAEKM YDFWVSALHL EDTNVKKMLP LMFVEIVVAV
0501: GHFLEIEYKV MGSDLVKLWS MIFALSAINA SSKDIKPCLL LTSKISSLSS QVIRTFSELR QVAHSICTLC NTVRTFRAVA GPDAVPGPFP VASLSSHKCF
0601: ESLATLLSSQ TLRDAICTSI NSMPEGQSSR CIEELTVDLT ETLKWMKSCD DFVDLETQGE PRLMSRKSVF HQRAELFGRY LSELYTSVLD SITVTASNTT
0701: LVAKSVERLV NTIRPNLSQL MRNESINPSE FISSVVGKNL SNKQCANWQK IPSLSWFFAF FFRIYTSCRS LYLQSVGLMP PNLAIEATEL VGNSFIVCCG
0801: KEWTNTSNII AEGYFAWIVE SAGSLWEVIE ILSQSLPRNH SGFTTLFYTL HVMALQRLED LNRQINAFDF LLEDGTQQFD TEDREKTELL KDPCCLEATR
0901: LTSFMMNYVR TLSSGGTNRI SSWDMSICSL DEDSFHIATW RLLCENIDIW SSHASKKDLK NFFSNLIKFS FVQKRSCKDE EGSDCQDSCR EITLHTISVE
1001: LLCDTIIYDQ KVLLKNLVSC FCGALKKSIS SFMTRADEDN ALLNISPDMM EILNKLNNEK LVCTYPDSTH AHGVDKYRIC ENLLNFCSTV PGFHSNSKSF
1101: LQLITYILHL ERLLLLTLLN HHYESCNPIE LIRLFICCRR AMQNLVLKFG KEYPDSKQYS TFSELLGNSY SLIWLLRSVQ EIIGLSHEIF GEHTDQKKNT
1201: LFSLVDKTSE IFSTLANMNS KFCLLGPKKQ IGSSLKHTAS ESDTSEHDAL ENSALEHVKT MAEQLEKTTA GIPVTTKDCK CVIKIENSYD NVCWDKLLCT
1301: MSCIGGFLWG LVSAFESTIK DYPTASSEER KLMLHYASNF SRSIAKFETF VDICLHVLFM ENKDFGSVDL ISGRLPQELD CENGFLNIEV VMDGWTMHQL
1401: KDNKLQSDGP PGMKRSLLEN LLNGEGPFVA FTLRELYSVS AAIVKLKGLI SFSGNVCRKA CNPFQHLSLN PMVGTACIAL QKIADMSDWP DMFSLVWIDG
1501: ILRYLEVLGT FPGLNLSKEL YAQIVNAHVS AIGKCILLQG KSATLPTHEI GSSTKILQLQ NTSGYVVTKN IIDRQNRLNS LISRLRLSMR NFVSVASNMH
1601: LSATLQVIER ALVGVNQYSH SIYEVETGTS DGGTVSSDVA AGIDCLYLVL GSVPGNKRVF QRTVPSLVGA LFNIVLHLQS PLIFYIEKLP PLCPDLHPEA
1701: GAIVLMCVEV ITSFVGRHTF QIDACHVSQC LHLPVMLFKG FKHLLADRSV SCSSENIREQ IAGQPLASKE YLLDRQFSVD MYAACCKLLC TVLRHQQSEV
1801: GQCVAVLEDS VNILLSCLES ADSKMVSMAG CFTWNKEEAL KCASFFRRIY EEMRQQKTIM EHHSMHFLAG YISMFSGLGP FQTGITREID EALRPGVYSL
1901: IDICQESDFQ QLHTYLEGPC RTTLANLVHD YKLHFQYQGK I
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKACD QEETVTDIVV EEGPWKNLEL ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
0101: KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS
0201: VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK
0301: NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM
0401: MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT
0501: EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG
0601: CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV
0701: SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE
0801: TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI
0901: YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ
1001: HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE
1101: VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN
1201: LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE
1301: ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF
1401: EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI
1501: SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL
1601: HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG
1701: IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE
1801: LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW
1901: VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.