Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 3.16 | 57.52 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.38 | 56.96 |
| CDY68304 | Canola | golgi | 2.82 | 54.72 |
| CDY55339 | Canola | extracellular | 3.02 | 50.82 |
| KRH15847 | Soybean | cytosol | 2.77 | 45.97 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 44.43 | 44.13 |
| CDX68631 | Canola | extracellular | 2.73 | 43.08 |
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 33.67 | 36.77 |
| Bra011167.1-P | Field mustard | cytosol, peroxisome, plasma membrane, plastid | 33.48 | 36.58 |
| CDX68630 | Canola | cytosol, nucleus, peroxisome, plastid | 33.09 | 35.98 |
| AT4G30150.1 | Thale cress | nucleus | 35.04 | 35.84 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 35.52 | 35.75 |
| TraesCS4D01G258100.1 | Wheat | plastid | 31.14 | 32.97 |
| TraesCS4A01G046600.1 | Wheat | plastid | 31.19 | 32.91 |
| TraesCS4B01G258300.3 | Wheat | plastid | 31.05 | 32.8 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 15.47 | 32.32 |
| HORVU4Hr1G070090.5 | Barley | plastid | 30.8 | 32.15 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 30.51 | 32.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.78 | 31.83 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 16.01 | 31.3 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 30.36 | 31.25 |
Protein Annotations
| EnsemblPlants:Solyc10g054860.1.1 | EnsemblPlantsGene:Solyc10g054860.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0008150 | GO:GO:0042254 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 |
| SEG:seg | UniParc:UPI0002769312 | UniProt:K4D179 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr10:+:56015622..56026590
Molecular Weight (calculated)
231022.0 Da
IEP (calculated)
6.680
GRAVY (calculated)
-0.012
Length
2055 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKMKKRKQHS TDKEEGCSRP SKSHRTEQLA GEVEEPIAVP ESEEAINIQD DSPWRNLQLI LSLQNNSIPL QEKLELAYNY VKSRTEGAGE CREDIQTVNF
0101: SRVVVFLNNW VQRILVSSEK KIRVEGDKHA MEIAGSYSDC RCWVIFRFCL EESKKMGVSL HFLRDLLRVI QYISRDALIR LGDQPMVSED LELHNIVLDC
0201: ISLVFSSHGG ISNENLDLWI SLISVVLEFL RKVLNDKLDG TKAGIFAKQL SCCLLEPFVK FLKVHPTRKN GFREFIDKLF EDLVIVWDVL DVHGCESNPE
0301: WKRNLLVLIE EVLSQALFHP THIDGFLSLQ STSKYRHSDD KKSKEEKTFI KSYHRHLFDK LGKIITGKNE SALSGAGELL RLFINCIYMK NGVVVGAEAF
0401: RHQEGNSTAF SRSSSNSSAI STSPPQYALP AEARKSVFDF FVEIMELFLS EIYTHSQAGV DAEPLYMGLS TLRSINKLLA TCVQEKVYIR TEDTSEGACF
0501: NFLKLIYDAI MSLAVQMNRL LQSFDSPEER IPGQLLILAA KEIFLAIHYL VDIEYEVVGD DLEKLWGMIL ALTTSSHPLM KASDQHLLTS EVLKLGCRLV
0601: HLYSELRQVN IAIFTLSKAV RDVLSSFRSN KVIKSSMLCH SFANSMSMLL CSPEFRLSIR NAVKSIPEGQ ASGCIRQMIV DVAESLEWIK SEYQLPAESD
0701: FAEPCFSSCG TLCFDLKAEI LGKSLTEMYT LILDSITITT GNSNLIALSV KDLMAVIRPG LSSLVSQGPD ILSVFFTLVT GRGFSKAAAL GNDILSACWI
0801: VVFFFRLYMS CRSLQRQAIS LMPPDASRKM SRVLTDSFSA YSAKDWLESS GWEDESYFSW VVQPSAPLPA VLHIIAEFCD QHTVIVCYPL IYVLSGMALQ
0901: RLVDLNRQMK SIDYLLQRNN NIVQTILDND AGLSSYSKDT KKWNKHVSTL KKEAADLTEF MIRYLSLVTE DRIYKSTVDQ VSSKNTYLNH LYETEVWDLG
1001: TGSIDEKLFP SALWWIICQN VDIWCPHASK KDMKKFLLAL IQNSRPCLST NMSDLRNYIE KSGHVTGVNR HLISVELLSN IILYEQRPIC RHMASVFCQI
1101: LKKSVSSIFS YVGEVDVNGA PDWENAILML EKSSTIFFRS NHPQDNDSLL IEPVHHLLND IPAELIEKEP SPLNAEITRC RAFLNLLSWI PKGHLSSKSF
1201: SRYATSILNI DRLVVGCLFD QHGSVALCSR YELLRLLLTC RRTFKNLLMA SREGKKGHQS LLACFLSESS PVFWLLKSLS AVTGFLSVIS QETSPQLKHM
1301: IFSLMDHTSF ILLTLFKDQF EAIFADGQEE TVLRENGPCS QFSDNNDAWR SVSSVAGTLT GHAQELLDSL NLAVVNRKVG DLAGLQEMDK ISPVISCFQG
1401: FLCGLVSAMD SLDIKSSSTF IESTICNLKM KPCIETCANL LYSILHLLFL EGDQCPQGLS STHTTIETEC CNELLAAGTY QSRDSADEAN NVNKEEHYSG
1501: SADSLQSNDS KNDLQKFGGI ESLLANVDFE QQYLRKSLLQ ALSIGENLEA AFCLKHIFGA SSAILKFSLH TKSTSLPKNL LPLLIRVSHV LLSDFANHSG
1601: SLEQFSFIWL DGVAKFIGEL GKVFPLLNPL SSRDLFVKHI ELHLRAMGKC ISLQGKEATL ASREIESSTK MLSGLPEHDL SNSHWLNHLD ELKSRLRMSF
1701: ANFVSRASEL HLLSAIQAIE RALVGVQEHC IINYEITTGS SHGAQVSAYV AAGIDCLDLI LESVSGRKKV AVIKRHIQNL VSSLLNVILH LQGPKMFFRN
1801: HKFRKDFAEP DPGSVCLMCI SVLTKISAKH AFFQLEACHI GQLLHLPATV FQCAFQLWTS KVLLCSNYTG GSTFEETEVP GSERSVVDRE FCIKLYAACC
1901: RMLCTVLKHH RSETRRCIAL LEDSVGRLLN CLEMVCTSPV GGDYFGWEVQ VGVKCASFLR RVYEEIRQHK DVYGNNCFQF LSCYIWVYCG YGRLRNGIIR
2001: EIDEALRPGV YALVDACSED DLQRLHTVFG EGPCRNTLAT LQHDYKIHFQ YGGKV
0101: SRVVVFLNNW VQRILVSSEK KIRVEGDKHA MEIAGSYSDC RCWVIFRFCL EESKKMGVSL HFLRDLLRVI QYISRDALIR LGDQPMVSED LELHNIVLDC
0201: ISLVFSSHGG ISNENLDLWI SLISVVLEFL RKVLNDKLDG TKAGIFAKQL SCCLLEPFVK FLKVHPTRKN GFREFIDKLF EDLVIVWDVL DVHGCESNPE
0301: WKRNLLVLIE EVLSQALFHP THIDGFLSLQ STSKYRHSDD KKSKEEKTFI KSYHRHLFDK LGKIITGKNE SALSGAGELL RLFINCIYMK NGVVVGAEAF
0401: RHQEGNSTAF SRSSSNSSAI STSPPQYALP AEARKSVFDF FVEIMELFLS EIYTHSQAGV DAEPLYMGLS TLRSINKLLA TCVQEKVYIR TEDTSEGACF
0501: NFLKLIYDAI MSLAVQMNRL LQSFDSPEER IPGQLLILAA KEIFLAIHYL VDIEYEVVGD DLEKLWGMIL ALTTSSHPLM KASDQHLLTS EVLKLGCRLV
0601: HLYSELRQVN IAIFTLSKAV RDVLSSFRSN KVIKSSMLCH SFANSMSMLL CSPEFRLSIR NAVKSIPEGQ ASGCIRQMIV DVAESLEWIK SEYQLPAESD
0701: FAEPCFSSCG TLCFDLKAEI LGKSLTEMYT LILDSITITT GNSNLIALSV KDLMAVIRPG LSSLVSQGPD ILSVFFTLVT GRGFSKAAAL GNDILSACWI
0801: VVFFFRLYMS CRSLQRQAIS LMPPDASRKM SRVLTDSFSA YSAKDWLESS GWEDESYFSW VVQPSAPLPA VLHIIAEFCD QHTVIVCYPL IYVLSGMALQ
0901: RLVDLNRQMK SIDYLLQRNN NIVQTILDND AGLSSYSKDT KKWNKHVSTL KKEAADLTEF MIRYLSLVTE DRIYKSTVDQ VSSKNTYLNH LYETEVWDLG
1001: TGSIDEKLFP SALWWIICQN VDIWCPHASK KDMKKFLLAL IQNSRPCLST NMSDLRNYIE KSGHVTGVNR HLISVELLSN IILYEQRPIC RHMASVFCQI
1101: LKKSVSSIFS YVGEVDVNGA PDWENAILML EKSSTIFFRS NHPQDNDSLL IEPVHHLLND IPAELIEKEP SPLNAEITRC RAFLNLLSWI PKGHLSSKSF
1201: SRYATSILNI DRLVVGCLFD QHGSVALCSR YELLRLLLTC RRTFKNLLMA SREGKKGHQS LLACFLSESS PVFWLLKSLS AVTGFLSVIS QETSPQLKHM
1301: IFSLMDHTSF ILLTLFKDQF EAIFADGQEE TVLRENGPCS QFSDNNDAWR SVSSVAGTLT GHAQELLDSL NLAVVNRKVG DLAGLQEMDK ISPVISCFQG
1401: FLCGLVSAMD SLDIKSSSTF IESTICNLKM KPCIETCANL LYSILHLLFL EGDQCPQGLS STHTTIETEC CNELLAAGTY QSRDSADEAN NVNKEEHYSG
1501: SADSLQSNDS KNDLQKFGGI ESLLANVDFE QQYLRKSLLQ ALSIGENLEA AFCLKHIFGA SSAILKFSLH TKSTSLPKNL LPLLIRVSHV LLSDFANHSG
1601: SLEQFSFIWL DGVAKFIGEL GKVFPLLNPL SSRDLFVKHI ELHLRAMGKC ISLQGKEATL ASREIESSTK MLSGLPEHDL SNSHWLNHLD ELKSRLRMSF
1701: ANFVSRASEL HLLSAIQAIE RALVGVQEHC IINYEITTGS SHGAQVSAYV AAGIDCLDLI LESVSGRKKV AVIKRHIQNL VSSLLNVILH LQGPKMFFRN
1801: HKFRKDFAEP DPGSVCLMCI SVLTKISAKH AFFQLEACHI GQLLHLPATV FQCAFQLWTS KVLLCSNYTG GSTFEETEVP GSERSVVDRE FCIKLYAACC
1901: RMLCTVLKHH RSETRRCIAL LEDSVGRLLN CLEMVCTSPV GGDYFGWEVQ VGVKCASFLR RVYEEIRQHK DVYGNNCFQF LSCYIWVYCG YGRLRNGIIR
2001: EIDEALRPGV YALVDACSED DLQRLHTVFG EGPCRNTLAT LQHDYKIHFQ YGGKV
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.