Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30150.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G30150.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28163 | Canola | cytosol, peroxisome, plasma membrane, plastid | 91.16 | 91.55 |
| CDY15654 | Canola | cytosol, peroxisome, vacuole | 4.97 | 83.19 |
| CDY68304 | Canola | golgi | 4.5 | 80.19 |
| CDY55339 | Canola | extracellular | 4.6 | 71.31 |
| AT4G30150.1 | Thale cress | nucleus | 70.42 | 66.25 |
| CDX68631 | Canola | extracellular | 3.65 | 53.08 |
| GSMUA_AchrUn_... | Banana | extracellular | 4.18 | 50.0 |
| KRH15847 | Soybean | cytosol | 2.96 | 45.16 |
| VIT_03s0038g01490.t01 | Wine grape | nucleus | 42.06 | 38.42 |
| Solyc10g054860.1.1 | Tomato | nucleus | 35.98 | 33.09 |
| KRH42586 | Soybean | mitochondrion, nucleus, peroxisome, plasma membrane | 33.76 | 31.24 |
| Os03t0203100-01 | Rice | cytosol, peroxisome | 15.24 | 29.27 |
| TraesCS4A01G046600.1 | Wheat | plastid | 29.95 | 29.06 |
| HORVU4Hr1G070090.5 | Barley | plastid | 30.26 | 29.05 |
| TraesCS4B01G258300.3 | Wheat | plastid | 29.84 | 29.0 |
| TraesCS4D01G258100.1 | Wheat | plastid | 29.63 | 28.85 |
| KXG39927 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 29.68 | 28.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.94 | 28.45 |
| KRH44786 | Soybean | cytosol, nucleus, plasma membrane | 15.56 | 27.97 |
| Zm00001d028096_P006 | Maize | cytosol, peroxisome, plasma membrane | 29.21 | 27.64 |
Protein Annotations
| EnsemblPlants:CDX68630 | EnsemblPlantsGene:GSBRNA2T00130278001 | InterPro:Urb2/Npa2_C | PANTHER:PTHR15682 | PFAM:PF10441 | ProteinID:CDX68630 |
| ProteinID:CDX68630.1 | SEG:seg | UniParc:UPI0004EE684F | MapMan:35.2 | : | : |
Description
BnaC01g08230D
Coordinates
chrLK031789:+:307565..314318
Molecular Weight (calculated)
211425.0 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.032
Length
1890 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRKDTTPPQ KPNPSKKTKK TKKKNNPQTQ RVDVPIEVLE TKPCDQKETA LGIVSEEGPW KNLELILSLQ NSELKDKEKM ELAFSFVEAY TGEKESDDED
0101: EEQECQAVTT SRLVMYLSDW IQSLFFSKEQ NFQVKSEICL DFRCWSILSF CLKQSSILHV SINSSRYLLK AIGFIAGDLL SSIGDGQGFE AFSSVVDSVD
0201: LLFSSKSGLF NDNFDLWFSA VEPVLNLTHR VLAENIKDGN AFVLRFSCLV LEPFSTFMVQ PTKKNGFHDF VDKLVEPLLS VLGLLIPREG KGYGLETTLL
0301: KLIQEILSLG LFHSSHIDGF LGLGGAERYL PESKVSKTVL KSYHRHFFTK FENMLVMKKE VELSCMGSLF SLFINRVMKQ QRDSNQLATK ASKQQGASTN
0401: DNESSAKSHH SSFIRWESRK SLFDFFLHLM EPILLKIDGH VESSSDTASL LADFCCLIKS ANSLLYHFAH ERIYVKTEDA SEGACFCFLK KIFTTIVSVA
0501: SQLQHTYSEG SKIHVLLAKE LITAIGYLLQ IEYEVIENDL VTLWLTILSF ARFSSLSSEN TEDDCPLTSL LLGLGCQLIN LYSDLRQVSV AVLAMCKAVR
0601: LVIPSDVDNG EMVDIRELPL LERSAASVEK LMSCQDLRLA MHRAVKAIPE GQASDFIKSL TTDVSETIGW IRVSCSSSSR EQDGEVAAFL AGALSAIYSL
0701: ILDSLTIKTG NSISVAESMN SLVILIRPCL SHLVSSDSDC IESFLSAVTG KGLDIVISEK NRETYRKSAR LFIIFFLRIY MSSRSLSRQL ISLMPPKKSK
0801: EMAVIMGDSA TARRGSDWVK KKSWNDEGYF SWICQPSASI VDIIKQISDV YLKDDSADCS LLVYILYGVA LQRLVDLNRD IKSLDYVSQI SDHQMHGTAL
0901: EHVSVLKSEG EELTCFLLGN NTIIPGFAEG GTFETMDNTD QCLTAVRLGV LSQHIDIWCP HAGKKNMKSF LSHLIGSSVM SNFGLENSVD KGTQNKKTGL
1001: EQSSLGLLCD SVLYEHEFVR RSLAPSLSHI LKTTADALFK DFAEEVDSQP DWSEVLLLLE SSVAKLQSEA FVEAHVSQLD NRKFTACQNL LNLLCVMPKE
1101: YVNKKSLQLY ASFLLDLERF IVFSMLRCLN KPSPGDMQNL FSLFITCRKT LKSVAMVSCD KVLRSTDLPL SDTSLLTSWL FKSVQAVVTC QEKVRSDFTR
1201: KSRDGLFALM DQTSYMFLTV SRDQFSKALP LFDGQLISTE GSGQANLAFD SVTEQAETLL IALRTTFRDE RTVFECKTLI LNELVPIFSS LSGLLWGLAS
1301: TVSHRDMQKS HKNAKLRWKS EEFSKLSGII HVLSNFFEVF AQYLFLSADA QREIRTSLNW TRLLDGTEGS NGLVCGDIVE TSSNVKKQII ESLLKGNSTE
1401: VVLALRHLLI ASAAILNLNL QIKGITFSPS FIPVLTGISF DLLSVLAGTS ELPLEISFIW LDGAAKFLEE LGSHLCLYKR MLNRDHLYSK SVELHLKVIG
1501: KCISLQGKEA TLESHETGFG TNVIHAKKVE SERSRSHQRL HWLEELKVRF RMSFKVLLHN SEESHLKSGL EAIQRALVGV CEVCPAIYSI QTGDRDGGRI
1601: SETAAAGIDC LDLVLEHATG RNRLSEVKGR IHGLMSAVFG IMAHMQSPFI FCTDTVVGKQ CPKSPDAGSV ILMCVEVLIR IAGKHALFEM NPSHISQSIH
1701: MPGAIFRDYG HLLHKDDQQQ DLQVDQKFSV SLYAACCRLI YTSVKHHPKK TERSIATLLE SVSALLHCLE TAGNKVFKLA PFEVEEGITC ACFLRRIYEE
1801: LRQQKEVFGH HCFKFLSTYI WISCGYGPLK TGIKREVDEA LRPGVYALVD SCSDQDRQYL HTVFGEGPCR NYLATLKQES DLNFKYEGKV
0101: EEQECQAVTT SRLVMYLSDW IQSLFFSKEQ NFQVKSEICL DFRCWSILSF CLKQSSILHV SINSSRYLLK AIGFIAGDLL SSIGDGQGFE AFSSVVDSVD
0201: LLFSSKSGLF NDNFDLWFSA VEPVLNLTHR VLAENIKDGN AFVLRFSCLV LEPFSTFMVQ PTKKNGFHDF VDKLVEPLLS VLGLLIPREG KGYGLETTLL
0301: KLIQEILSLG LFHSSHIDGF LGLGGAERYL PESKVSKTVL KSYHRHFFTK FENMLVMKKE VELSCMGSLF SLFINRVMKQ QRDSNQLATK ASKQQGASTN
0401: DNESSAKSHH SSFIRWESRK SLFDFFLHLM EPILLKIDGH VESSSDTASL LADFCCLIKS ANSLLYHFAH ERIYVKTEDA SEGACFCFLK KIFTTIVSVA
0501: SQLQHTYSEG SKIHVLLAKE LITAIGYLLQ IEYEVIENDL VTLWLTILSF ARFSSLSSEN TEDDCPLTSL LLGLGCQLIN LYSDLRQVSV AVLAMCKAVR
0601: LVIPSDVDNG EMVDIRELPL LERSAASVEK LMSCQDLRLA MHRAVKAIPE GQASDFIKSL TTDVSETIGW IRVSCSSSSR EQDGEVAAFL AGALSAIYSL
0701: ILDSLTIKTG NSISVAESMN SLVILIRPCL SHLVSSDSDC IESFLSAVTG KGLDIVISEK NRETYRKSAR LFIIFFLRIY MSSRSLSRQL ISLMPPKKSK
0801: EMAVIMGDSA TARRGSDWVK KKSWNDEGYF SWICQPSASI VDIIKQISDV YLKDDSADCS LLVYILYGVA LQRLVDLNRD IKSLDYVSQI SDHQMHGTAL
0901: EHVSVLKSEG EELTCFLLGN NTIIPGFAEG GTFETMDNTD QCLTAVRLGV LSQHIDIWCP HAGKKNMKSF LSHLIGSSVM SNFGLENSVD KGTQNKKTGL
1001: EQSSLGLLCD SVLYEHEFVR RSLAPSLSHI LKTTADALFK DFAEEVDSQP DWSEVLLLLE SSVAKLQSEA FVEAHVSQLD NRKFTACQNL LNLLCVMPKE
1101: YVNKKSLQLY ASFLLDLERF IVFSMLRCLN KPSPGDMQNL FSLFITCRKT LKSVAMVSCD KVLRSTDLPL SDTSLLTSWL FKSVQAVVTC QEKVRSDFTR
1201: KSRDGLFALM DQTSYMFLTV SRDQFSKALP LFDGQLISTE GSGQANLAFD SVTEQAETLL IALRTTFRDE RTVFECKTLI LNELVPIFSS LSGLLWGLAS
1301: TVSHRDMQKS HKNAKLRWKS EEFSKLSGII HVLSNFFEVF AQYLFLSADA QREIRTSLNW TRLLDGTEGS NGLVCGDIVE TSSNVKKQII ESLLKGNSTE
1401: VVLALRHLLI ASAAILNLNL QIKGITFSPS FIPVLTGISF DLLSVLAGTS ELPLEISFIW LDGAAKFLEE LGSHLCLYKR MLNRDHLYSK SVELHLKVIG
1501: KCISLQGKEA TLESHETGFG TNVIHAKKVE SERSRSHQRL HWLEELKVRF RMSFKVLLHN SEESHLKSGL EAIQRALVGV CEVCPAIYSI QTGDRDGGRI
1601: SETAAAGIDC LDLVLEHATG RNRLSEVKGR IHGLMSAVFG IMAHMQSPFI FCTDTVVGKQ CPKSPDAGSV ILMCVEVLIR IAGKHALFEM NPSHISQSIH
1701: MPGAIFRDYG HLLHKDDQQQ DLQVDQKFSV SLYAACCRLI YTSVKHHPKK TERSIATLLE SVSALLHCLE TAGNKVFKLA PFEVEEGITC ACFLRRIYEE
1801: LRQQKEVFGH HCFKFLSTYI WISCGYGPLK TGIKREVDEA LRPGVYALVD SCSDQDRQYL HTVFGEGPCR NYLATLKQES DLNFKYEGKV
0001: MLKRKLTSPK KSKPSKKTKK NSKTQFDDSP VEVVETKAEE LPRTGSKKSN PSKKRKQTKK NSETQFEDSS VEVVETKACD QEETVTDIVV EEGPWKNLEL
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
0101: ILSLQSNTLG FKKKVELAFS FVKGYGGENG TNEDEECQAV KISRLIIFLS DWIQSLLIPS EKNIKVKCDL DSEPCLDFRC WEIFSFCLKE ATILGVSLNL
0201: SRNLLKAIGL ITGRFLSALN ESLATGVDFC NGQGFVVYSS VVDCLGLLFS SKSGMSNDNL DLWFSTVEPV LKLTHTVLVE NIKDSLGDRH VLKFSCLVLE
0301: PFSRFLMTHP TTKNGFCDFL DKLFEPFMDV LGLLNLIEDK NKDLEISLLR LIEDILSLAL FHSAHIDGFL GLGGAKKYLP ESKENKTILK SYHRHFFTKF
0401: KNMLLMKKEL ELSCMGSLFK VFIYRVMKQQ RDPNQLQEGM MTKASNARQA EERPWKLADT ATNDNGSSTK SHYSSSLRLE TRKSIFDFFL HLMEPILLEI
0501: NGYNQSGSEM APLLGDFCCV IKSANSLLFN FAHERMYVKT EDASEGACSC FLRTIFKTIV SVASELKKHC PYDNGSEMHV LLAKELVTAI GYLLHIEYEI
0601: IESDLVTLWL IILSFLEFSS LSPENSEGDC PLTSLLVGLG CQLITLYSDL RQVSVAVFSL FKAVRLVMPV VTPADGDDDE MIATEELPLS TVFPFRLERS
0701: EKSVEKLLSS QALRLAIHKA IKVIPEGQAS GCIKSLTADV SKTMKWIKQV CCSTGATEQD GQVAAFLAGS LSDIYSLILD SITITTGNSN LVGQSMKDLL
0801: DLISPCLTHL VSSDSDCIEN FLSALTGKDL EIVMAEKKIE TYRKSVRLFV IFVLRIYMSS RSLYRQVISL MPPKKTKDMA GIKGDSVAVR CGSDWIKEKS
0901: WNYEGYFSWI SQPSASIVDT IKHISAFYLK DDSADCSLLI YILYGVALQR LVDLNSHIKS LDYVSQISDN QINDTMLKHV SVLKREGEEL TDFLLGNNII
1001: SGFVDDGTFE TIKDTDQWVL RVSGINGKCL PTMRLWVLSQ HIDLWCPHAG KKKLKNFLSQ LIGSSVPCIL NGVGMSTLGW ENNVDKGSQK KKIGLEQFSF
1101: GLLFDSVLYE HEFVRRYLAP SFSHVLKMTA ETFFKDITEE VNFDSPSDWS EVLILLESSI ANLSGKLKSE AFLEAHVSLL DNRKFTACQN LLNLLGVMPK
1201: EYTNKKSFQL YASYVLDLER FIVFSMLRCL NKLSCGDMQN LFSLFSTCRK TLKSIAMISC DKVLGATKLP LSDSSLLASW LFKSAQAATC QVRFRNDVTG
1301: KARDALFSLM DHTSYMFLTV SKYQFSKALP FSDEKLISSE ISEGTGQANL IIENLTEQAE TLLNALRATF RDEKTAFKCE SLILNKLTPI FSCFSGLLWG
1401: LASAVSNRDM QKNHQNAKLR WKSEQFSKLS RIIHVLSNFF EVFAQCLFLS GDVQREIQTN INWTRLLDGT EGSNGLVCGD VVETSDVKKK IIESLIKGDS
1501: SEVVLALKHL LIASAAILRL NLQIDGITFS PTFVSVLTNI SNDLLSVFAD MSEAPLEFSF IWLDGAVKVV EELGSQFCLS NPTLNIDLYS KLIELHLKVI
1601: GKCISLQGKE ATLESHETGF GTNAIHAKLV LTEKKRSHRL HWLDELKQRL RMSFKVFIHS SSELHLLSGV QAIERALVGV WEVCPAIYCI QTGNRDGGRI
1701: SETVAAGLDC LDLILEHATG RKRLNVVKRH IQGLMSAVFG IMAHMQSPFI FFSNAVVGNQ GSNSPDSGAV ILMCVGVLIR IAGKHALFRM DSSHVSQSIH
1801: IPGAIFLDYL HATRVGFSVL DGNLLSKDDQ QQDLLGCSKE LQVDRKFSVS LYAACCRLLY TAVKHHKSQT EGSIATLQES VSALLHCLET AGKNLGNCVS
1901: WEVEEGIRCA CFLRRIYEEL RQQKEVFGQH CFKFLSTYIW VSSGYGPLKT GLEREVDEAL RPGVYALIDS CSPNDLQYLH TVFGEGPCRN SLATLQQDYK
2001: LNFKYGGKV
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: /.../Link). [Source:TAIR;Acc:AT4G30150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.